Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0487
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69810.1 68414.m08032 WRKY family transcription factor              26   6.4  
At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein s...    26   6.4  
At5g17540.1 68418.m02058 transferase family protein similar to h...    26   8.5  

>At1g69810.1 68414.m08032 WRKY family transcription factor
          Length = 387

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 289 SNSVNSINKTLAISSDNX*SFSLL*FINYFHFN*GK*NSITTGTIEVVVPTYHNK 125
           +++  S+ ++ + SS +  S SL  F  + HF+    NS  T T+++  P Y N+
Sbjct: 274 TSAAASLLQSGSSSSSSSTSASLSYFFPFHHFSISTTNSHPTVTLDLTRPNYPNQ 328


>At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein
           similar to gibberellin 20-oxidase GI:4164141 from
           [Lactuca sativa]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 385

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 252 YHRIXINPLVYYDSSIIFTSTEENKILSPP 163
           YHR  +N      S + F+   E+KI+ PP
Sbjct: 304 YHRAVVNKEKVRRSLVFFSCPREDKIIVPP 333


>At5g17540.1 68418.m02058 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 461

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 261 LWQYHRIXINPLVYYDSSIIFTSTEENKILSPPVP 157
           LW+Y  I + P    +  +I      +K+ +PP+P
Sbjct: 269 LWRYRTIALRPDQDKEMRLILIVNARSKLKNPPLP 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,806,130
Number of Sequences: 28952
Number of extensions: 83066
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)