Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0482
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 119 2e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 66 4e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 52 3e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 4e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 2e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.001
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.16
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.21
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 1.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 4.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 119 bits (287), Expect = 2e-28
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDE ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 104 bits (249), Expect = 8e-24
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 389
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 64.5 bits (150), Expect = 8e-12
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P PCLLTEA LNPK+NREKMTQI+FETFN PA Y
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFY 133
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 65.7 bits (153), Expect = 4e-12
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG E
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61
Score = 56.8 bits (131), Expect = 2e-09
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPV 392
AQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPL 108
Score = 33.5 bits (73), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAM 478
P P LLTE L N+EK+ + +ET N PA+
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPAL 137
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 52.4 bits (120), Expect = 3e-08
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEHRA 264
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDE A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 48.0 bits (109), Expect = 8e-07
Identities = 15/41 (36%), Positives = 33/41 (80%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 377
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
PRG LLTE +NP ANREKM + MFE + +Y
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVY 133
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 4e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 279 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
+L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 255
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = +2
Query: 368 CRPRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
C P LLTE LNP NRE +IMFE+FN +Y
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLY 156
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 34.7 bits (76), Expect = 0.007
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 276 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
+ +K I +G V NWD +W + +L+ P EHP+
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Score = 34.3 bits (75), Expect = 0.010
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 335 DLASY-LLQ*AACRPRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
DL Y L Q P P L+TE NP NR K + MFE+ PA Y
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATY 131
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
Score = 27.9 bits (59), Expect = 0.86
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 392 LLTEAXLNPKANREKMTQIMFETFNTPAMY 481
++TE NP++ R+++ + FE + PA Y
Sbjct: 105 MITEPSWNPQSVRQQIMEAAFEQLHVPAFY 134
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.1 bits (82), Expect = 0.001
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVC 395
P E +++NWD ME++ +TF +L + EHP+C
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPIC 119
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 201
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 31.9 bits (69), Expect = 0.053
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 386 PCLLTEAXLNPKANREKMTQIMFETFNTPAM 478
P +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.16
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 248 PTYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.21
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 323 IPVSDDSVFDGVFEGQDTSFALCSSPTYESFCPIPTITP*WRGLPTIEGNTARGASSPAK 144
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 143 PALHIP 126
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 207 GRDGRYGTEGLVRRRRAQSKRGILTLK 287
GRDGRY +E L RR+ S + + +L+
Sbjct: 186 GRDGRYKSEDLKRRKLQPSSKPLSSLE 212
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVC 395
PI+ G V +W+ ++ W H Y+ L P + +PVC
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVC 150
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 251 SPTYESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 133 TYRSHCLLPTRQLLRRTS*ISEI 65
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 253 RLLRTSPSVPYRPSRPDGGAFPRSRGTR 170
+L+ +PS PY SRP A S TR
Sbjct: 308 QLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAG 153
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,749
Number of Sequences: 5004
Number of extensions: 43644
Number of successful extensions: 151
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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