Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0482
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 127 4e-30
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 9e-29
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 9e-29
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 3e-28
SB_56| Best HMM Match : Actin (HMM E-Value=0) 121 3e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 6e-28
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 4e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 50 1e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 5e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 40 0.001
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.38
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.2
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 29 2.0
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 28 3.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 27 6.2
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 8.2
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 8.2
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 127 bits (307), Expect = 4e-30
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 107 bits (258), Expect = 4e-24
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P P LLTEA LNPKANREKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 123 bits (296), Expect = 9e-29
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 107 bits (258), Expect = 4e-24
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P P LLTEA LNPKANREKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 123 bits (296), Expect = 9e-29
Identities = 54/62 (87%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 107 bits (258), Expect = 4e-24
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P P LLTEA LNPKANREKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 121 bits (292), Expect = 3e-28
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 353
AQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 425 NREKMTQIMFETFNTPAMY 481
N + M +IMFETFN+PAMY
Sbjct: 78 NWDDMEKIMFETFNSPAMY 96
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 121 bits (292), Expect = 3e-28
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 107 bits (258), Expect = 4e-24
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 103
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P P LLTEA LNPKANREKMTQIMFETFN+PAMY
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 133
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 120 bits (289), Expect = 6e-28
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 107 bits (258), Expect = 4e-24
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 103
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P P LLTEA LNPKANREKMTQIMFETFN+PAMY
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 133
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 54.8 bits (126), Expect = 4e-08
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2
Query: 386 PCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P LLTEA LNPK NRE+M Q+MFE+FN P MY
Sbjct: 2147 PVLLTEAPLNPKMNRERMVQLMFESFNVPCMY 2178
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 76 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 222
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 386 PCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P LLTEA LNP+ NREK ++ FETFN PA++
Sbjct: 128 PVLLTEAPLNPRRNREKAAEVFFETFNVPALF 159
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 255
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDE
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 353
A R +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 374 PRGTPCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
PR T LLTE LNP NREKM ++MFE + +Y
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVY 137
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 285 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 386
K+PI H IV +WD ME+ W + LR PE+H
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 204 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 88
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 386 PCLLTEAXLNPKANREKMTQIMFETFNTPAMY 481
P L++EA N + REK+T++MFE +N PA +
Sbjct: 35 PLLMSEAAWNTRIKREKLTELMFEKYNVPAFF 66
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 392
PI+ G++ +WD EKI + + ++ HP+
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPL 36
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNE 362
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAV 174
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 277 RIPLLLCARLLRTSPSVPYRPSRPDGGAFPRSRGTRRE 164
R+ ++LCAR TS V + RPDGG GT+RE
Sbjct: 538 RLCMVLCAR---TSACVSFN-HRPDGGICQLKNGTKRE 571
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -3
Query: 344 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCSSPTYESFCPIPTITP*WRGLPTIEGNTAR 165
+P+L+ +S+D+V GV + + + P+Y +F + + +P + GNT
Sbjct: 4245 IPSLVKQFNISNDTVNVGVVTYSASQQEIIALPSYNNFSDVEKLV---SKVPYLGGNTLS 4301
Query: 164 GASSPAKPALHIPE 123
GA+ H+P+
Sbjct: 4302 GAALNYLRWEHLPQ 4315
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 325 SSQLVTI--PCSMGYLRV-RIPLLLCARLLRTSPSVPYRP 215
S LV++ P S Y + RIP LC L+ PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 194 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 84
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 174 VPLDRGKAPPSGRDGRYGTEGLVRRRRAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 347
V L + +GR+ G+ V R++A ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRKKAP----LITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 348 TFYN 359
T N
Sbjct: 497 TCPN 500
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 313 VTIPCSMGYLRVRIPLLLCARLLRTSPSVP 224
V PC M LRVR+ C +LR + P
Sbjct: 99 VVCPCCMSLLRVRVACPCCVSVLRVLIACP 128
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 204
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 254 SSPTYESFCPIPTITP*WRGLPTI 183
+SP Y S P+PT TP PTI
Sbjct: 1223 TSPPYTSASPVPTTTPSASSSPTI 1246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,118,806
Number of Sequences: 59808
Number of extensions: 400551
Number of successful extensions: 1119
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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