Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0482
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.2  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 127 GMCKAGFAGD 156
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 186 DRGEHGARSIISCETGLA 133
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 186 DRGEHGARSIISCETGLA 133
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   RHEVSSHCRAFNFHLV 48
           R  V+S C+AF +H V
Sbjct: 285 RMGVASFCKAFPWHFV 300


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 192 KAPPSGRDGRYGTEGLVRRRRAQSKRGILTLKYPIEHGIVTNWDD 326
           K  P G  G  G + ++       KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 192 KAPPSGRDGRYGTEGLVRRRRAQSKRGILTLKYPIEHGIVTNWDD 326
           K  P G  G  G + ++       KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,183
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)