Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3Y996 Cluster: Putative lipopolysaccharide A protein; ...    31   8.9  
UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4; ...    31   8.9  

>UniRef50_A3Y996 Cluster: Putative lipopolysaccharide A protein;
           n=1; Marinomonas sp. MED121|Rep: Putative
           lipopolysaccharide A protein - Marinomonas sp. MED121
          Length = 314

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +3

Query: 126 EKMSHIKL*FIRTITVCNVCLEKINQSNKSDFIPAKCIIMR*CINY*C 269
           ++++ I+  F  TI + N+ + K N+S+ SDF    CI+ R  +NY C
Sbjct: 9   QRLNKIRYYFSETINI-NLPIRKFNESDYSDFKKDACILDR--VNYYC 53


>UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1515

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = -2

Query: 223 IKSDLFD*LIFSKQTLQTVIVLMNYSFICDIFSEN--FSLILSKILTYGNGKVIESSRSD 50
           I  D  D  +FSK + Q+ I   N  F+  I+ EN   ++I  K++T  N K +E SR+D
Sbjct: 727 IMKDNLDLGLFSKFSYQSDIQAFN-DFV--IYHENDVHNIINEKLITEEN-KELEKSRTD 782

Query: 49  FYTT*IRNYN 20
              T I NY+
Sbjct: 783 LLNTIISNYS 792


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,030,392
Number of Sequences: 1657284
Number of extensions: 5271146
Number of successful extensions: 9747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9745
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)