Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   3.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   9.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   9.6  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 124 ENFSLILSKILTYGNGKVIESSRSDFYTT*IRNYNYTSHSS 2
           E++SL  S I +  NG+    S SDF+T+ + ++ +  HSS
Sbjct: 250 ESYSLPSSSI-SLNNGR--NQSSSDFFTSSLTDHAFNPHSS 287


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = -2

Query: 151 YSFICDIFSENFSLILSKIL 92
           +++ C+++SENF+ ++S  +
Sbjct: 529 FTWTCELYSENFNTVISSFI 548


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 214 DLFD*LIFSKQTLQTVIVLMNYSFICDIFSE 122
           DLFD  I+S   L   +V +N+  I  IFS+
Sbjct: 720 DLFDQAIYSLDALNAWLVELNHDRIKKIFSK 750


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 148  SFICDIFSENFSLILS 101
            S I D+FSEN SL+L+
Sbjct: 1107 SGIADVFSENMSLLLN 1122


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 445 YRPARKSKRAVKACXF*PKIKLXILCLTC 359
           ++P R   R+VK       I L  LC++C
Sbjct: 688 HQPKRMMDRSVKTFWIMSSISLTFLCISC 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,557
Number of Sequences: 5004
Number of extensions: 25336
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)