Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           28   4.2  
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)                     27   7.4  
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_53735| Best HMM Match : SecD_SecF (HMM E-Value=3.2)                 27   9.7  

>SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 84  PYVRILDNIKEKFSEKMSHIKL*FIRTITVCN 179
           PY R+L N++EK +EK+S + +  I  + + N
Sbjct: 581 PYRRVLFNLREKVNEKISELDIIDISNLILLN 612


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 220 KSDLFD*LIFSKQTLQTVIVLMNYSFICDIFSENFSLILSKILTYGNGKVIESSRSDFY 44
           K D+F  + +  +  + V V+  Y    D +S + +L   +  TY +GK +   R+D++
Sbjct: 105 KGDVF--VFYPGEGYRNVHVIRGYDTAADKYSSHLNLFSDEGGTYNSGKQVGYIRNDYH 161


>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
          Length = 499

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 175 QTVIVLMNYSFICDIFSENFSLILSKILTYGNGKVIESSRSDFY 44
           + V V+  Y    D +S + +L + +  TY +GK +   R+D Y
Sbjct: 228 RNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQVGYIRNDDY 271


>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 175 QTVIVLMNYSFICDIFSENFSLILSKILTYGNGKVIESSRSDFY 44
           + V V+  Y    D +S + +L + +  TY +GK +   R+D Y
Sbjct: 328 RNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQVGYIRNDDY 371


>SB_53735| Best HMM Match : SecD_SecF (HMM E-Value=3.2)
          Length = 160

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 181 TLQTVIVLMNYSFICDIFSENFSLILSKILTY 86
           T+ ++I L  +  IC   S++F L+++K+LT+
Sbjct: 27  TIMSLITLA-FGLICLFTSQSFQLLIAKLLTF 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,228
Number of Sequences: 59808
Number of extensions: 174472
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)