Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          24   2.2  
AY146747-1|AAO12062.1|  288|Anopheles gambiae odorant-binding pr...    24   2.2  
AJ618931-1|CAF02009.1|  288|Anopheles gambiae odorant-binding pr...    24   2.2  
L10441-1|AAA29361.1|  154|Anopheles gambiae transposase protein.       23   3.9  
L10438-1|AAA29359.1|  154|Anopheles gambiae transposase protein.       23   3.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.1  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 444 IDQRENLNGPSKHVXSSLRLNXXFYV*PAGXCQIEYXCLNYGV 316
           +DQ +N+   S+   S +      Y  P   C I Y  LN  V
Sbjct: 283 LDQNDNMTDLSRMSPSEMDTQPVMYHEPTFWCSISYYELNLRV 325


>AY146747-1|AAO12062.1|  288|Anopheles gambiae odorant-binding
           protein AgamOBP42 protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 317 FMIXETXQTIYECYKLTSIIYTSSHNYTLCRYKIRF-I*LIDFF*TNIANGYC 162
           F+  E  + +  C+ + + +Y+  H     R+K++F     D F   +   YC
Sbjct: 181 FLHTEPARCLLRCFTIRAGLYSDQHGPFADRFKLQFGAPKPDVFDNELEGDYC 233


>AJ618931-1|CAF02009.1|  288|Anopheles gambiae odorant-binding
           protein OBPjj83d protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 317 FMIXETXQTIYECYKLTSIIYTSSHNYTLCRYKIRF-I*LIDFF*TNIANGYC 162
           F+  E  + +  C+ + + +Y+  H     R+K++F     D F   +   YC
Sbjct: 181 FLHTEPARCLLRCFTIRAGLYSDQHGPFADRFKLQFGAPKPDVFDNELEGDYC 233


>L10441-1|AAA29361.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 87  YVRILDNIKEKFSEKMSHIK 146
           Y+++L+ +K++ + K  H+K
Sbjct: 100 YIKLLERLKDEIATKRPHLK 119


>L10438-1|AAA29359.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 87  YVRILDNIKEKFSEKMSHIK 146
           Y+++L+ +K++ + K  H+K
Sbjct: 100 YIKLLERLKDEIATKRPHLK 119


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 121  NFSLILSKILTYGNGKVIESSRSD 50
            NFS +  K++  GNG +I  + +D
Sbjct: 1038 NFSEVFKKLVPQGNGHLILRTTND 1061


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,981
Number of Sequences: 2352
Number of extensions: 6596
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39119412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)