Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical...    27   4.9  

>U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC13.1a protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 226 GIKSDLFD*LIFSKQTLQTVIVLMNYSFICDIFSENFSLILSKILT 89
           GI + +F  + F   T+ TV+ L NYS     FS  F L +S  ++
Sbjct: 161 GIANKIFQVVYFFGYTIVTVVYLRNYSLDDFEFSNTFGLNISYFMS 206


>U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical
           protein ZC13.1b protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 226 GIKSDLFD*LIFSKQTLQTVIVLMNYSFICDIFSENFSLILSKILT 89
           GI + +F  + F   T+ TV+ L NYS     FS  F L +S  ++
Sbjct: 161 GIANKIFQVVYFFGYTIVTVVYLRNYSLDDFEFSNTFGLNISYFMS 206


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -2

Query: 199 LIFSKQTLQTVIVLMNY-----SFICDIFSENFSLILSKILTYGNGKVIESSRS 53
           L+F ++T+ ++ +  +Y      FI D+F+    + LS ++T+GN  V+   +S
Sbjct: 192 LVFIEKTISSIYITDDYWDFTFLFIVDLFTLPLIIQLSYLITFGNLSVLRKLKS 245


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 CNVCLEKINQSNKSDFIPAKCIIMR*CIN 260
           C++CLE +   +K   +P  CI  + CI+
Sbjct: 145 CSICLEDLEAGHKIARLPCLCIYHKQCID 173


>AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical
           protein F33D11.12 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 326 ITEFMIXETXQTIYECYKLTSIIYTSSHNYTLCRYKIR 213
           I    +    QTIY+C K  SI    +H+ ++C   IR
Sbjct: 71  IERMQLINGQQTIYKCQKCASIKPDRAHHCSVCERCIR 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,354,532
Number of Sequences: 27780
Number of extensions: 139891
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)