Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0479
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03760.1 68418.m00339 glycosyl transferase family 2 protein s...    28   2.6  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   6.0  
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    27   6.0  

>At5g03760.1 68418.m00339 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 533

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 134 HLFRELFFNII*NSNIRKWKSDRIV*K*FLHYVNPKLQLHI 12
           +LFR++ F I+ N N+  WK   ++   +  +V  KL  HI
Sbjct: 335 NLFRKMAFEIMTNKNVTLWKKVHVI---YSFFVVRKLVAHI 372


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 84  PYVRILDNIKEKFSEKMSHIKL 149
           P+VRI D I + FS K  H++L
Sbjct: 401 PFVRISDGIIQHFSHKHHHLRL 422


>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 48  KSLLDDSITFPFPYVRILDNIKEKFSEKMSHIKL 149
           + +L++      P+VRI D I E FS +  H++L
Sbjct: 395 EGILEEDEKVEPPFVRISDRIIEHFSHQHHHLRL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,601,988
Number of Sequences: 28952
Number of extensions: 118692
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)