Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0470
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   146   2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   146   2e-36
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.34 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.8  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   2.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   3.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   4.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   4.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   4.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   7.3  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   7.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    24   9.6  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  146 bits (353), Expect = 2e-36
 Identities = 63/78 (80%), Positives = 71/78 (91%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 204 SSEALEAGRICCNKYLVR 257
           +SEALEA RIC NKYLV+
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  103 bits (248), Expect = 1e-23
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 263 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMXVRS 442
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV I Q +M VR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 443 SD 448
            D
Sbjct: 141 KD 142


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  146 bits (353), Expect = 2e-36
 Identities = 63/78 (80%), Positives = 71/78 (91%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 204 SSEALEAGRICCNKYLVR 257
           +SEALEA RIC NKYLV+
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  103 bits (247), Expect = 1e-23
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 263 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMXVRS 442
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV I Q +M VR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 443 SD 448
            D
Sbjct: 141 KD 142


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 48  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 224
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 225 G 227
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 105 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 224
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 231 ICCNKYLVRTAERISSISA*DFTL 302
           ICC KY V T  R + I    FTL
Sbjct: 9   ICCAKYFVNTKSRFNEILPPRFTL 32


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 139 RERPLTTFHCACTWCPTNMNS 201
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 220 RQDVSAAISTS*ELRKGSVPYPHET 294
           + +VSAA     EL   SVP+PH++
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKS 344


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 397  STLRLAKRTTHPSLEPISSS 338
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976



 Score = 25.4 bits (53), Expect = 4.2
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 286 ADMELILSAVLTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSK 122
           AD    L A   R+LLQ++     +  +    S  +  T S +SS V+   P+S+
Sbjct: 125 ADESARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQ 179


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = +1

Query: 61  KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 240
           KI R+R+  SV + L   S+S  W  R   L   H   T   +  +  A RL  + VS  
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391

Query: 241 ISTS*ELRKGSVPYPHETSPFPRYPH 318
           +S   E     +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 224  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 108
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 266 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 370
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 91  VGVYLIPRSVSSIWV 135
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126  DLGKKRATVDDFPLCVHLVSDEYEQL 203
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 81  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 191
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = -3

Query: 240 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 85
           C++ + PP KP + SA+      S  T E    S      LS    +R+ +W    P   
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553

Query: 84  SISDTVYFCSTGSI 43
             SD +   + GS+
Sbjct: 554 DTSDDINTIAPGSV 567


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 272  DPFRSSYEVL-IAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDT 117
            DP RS Y V+ +      L+ L     IFVGH +   ++++N      Q+ DT
Sbjct: 963  DPDRSPYNVVPLKVAYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDT 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,820
Number of Sequences: 5004
Number of extensions: 42049
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)