Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0470
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 135 1e-32
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 130 7e-31
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 116 1e-26
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 30 1.0
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 4.1
10_08_1022 + 22337332-22339398 28 4.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 4.1
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 5.4
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 5.4
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 27 9.5
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 27 9.5
04_04_1108 + 30961600-30962013,30963131-30964465 27 9.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 135 bits (327), Expect = 1e-32
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = +3
Query: 24 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 204 SSEALEAGRICCNKYLVRTA 263
SSEALEA RI CNKY+ + A
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 107 bits (257), Expect = 4e-24
Identities = 48/65 (73%), Positives = 55/65 (84%)
Frame = +2
Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT ARV I Q ++
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 434 VRSSD 448
VR +
Sbjct: 138 VRCKE 142
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 130 bits (313), Expect = 7e-31
Identities = 56/76 (73%), Positives = 64/76 (84%)
Frame = +3
Query: 36 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 215
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 216 LEAGRICCNKYLVRTA 263
LEA RI CNKY+ + A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 104 bits (249), Expect = 4e-23
Identities = 47/65 (72%), Positives = 54/65 (83%)
Frame = +2
Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRI Q ++
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 434 VRSSD 448
VR D
Sbjct: 445 VRCRD 449
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 116 bits (278), Expect = 1e-26
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = +3
Query: 45 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 224
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 225 GRICCNKYLVRTA 263
RI CNKY+ ++A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 105 bits (251), Expect = 2e-23
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +2
Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT ARV I Q ++
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 434 VR 439
VR
Sbjct: 134 VR 135
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -2
Query: 319 DADNVERVKSHADMELILSAVLTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 155
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 154 STVA 143
+ ++
Sbjct: 203 AHIS 206
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.9 bits (59), Expect = 4.1
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -3
Query: 279 WN*SFPQFLRGTYCS-RYVLPPKPLSSAVHIRRTP--SARTVESRQR--SLSSYPNRRYG 115
W+ + P F + R LP PLS + +P S R + SR R SLS P+RR
Sbjct: 257 WHSNVPGFSHDAPANLRTSLPDHPLSHSRGGSPSPPISGRDMGSRGRRQSLSPTPSRRAS 316
Query: 114 SWDQVHPDRTSISDTVYFCSTGSISL 37
S + DR S S+G L
Sbjct: 317 SSHSIERDRLSSYSKASATSSGEDDL 342
>10_08_1022 + 22337332-22339398
Length = 688
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 131 QIEDTDLGIRYTPTEPRFRIRFIFAVPVASRWPAPHGDLSRAE 3
++ TD+ + + PR R F + AS WP PH D + A+
Sbjct: 216 ELGSTDVIFQTGDSIPRIRALFNLSAAAASSWP-PHPDAASAD 257
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYL 251
T D P C +HL SD Y S E ++AG+ C L
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAAL 622
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 253 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 152
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 165 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 49
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -2
Query: 196 SYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFGYG 68
S D + T++ +SS++ + L + ++++ + R+NLDF +G
Sbjct: 230 SKQCDYEITYADRSSSMGI-LARDNMQLITADGERENLDFVFG 271
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 165 LCVHLVSDEYEQLSSEALEAGRICCNKYLV---RTAERISSISA*DFTLSTLSASIK 326
+C + + ++ + A R+CCN+ + TA+ IS + ++S+LS+S K
Sbjct: 314 ICAKIPGSPGKPPTARFVSALRVCCNRENILNQETAQNISKVVTWKRSVSSLSSSSK 370
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 240 CSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 136
C + PP PL++ V + P+A + S + +++S
Sbjct: 103 CGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,975
Number of Sequences: 37544
Number of extensions: 308122
Number of successful extensions: 836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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