Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0470
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 42 2e-04
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 31 0.45
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 30 1.0
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 30 1.0
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 1.4
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 2.4
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 3.2
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 28 4.2
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 5.6
SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11) 27 7.4
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15) 27 7.4
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 7.4
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 27 7.4
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022) 27 9.7
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18) 27 9.7
SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4) 27 9.7
SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4) 27 9.7
SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4) 27 9.7
SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4) 27 9.7
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4) 27 9.7
SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99) 27 9.7
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +2
Query: 365 MRGAFGKP*GTVARVRIXQPIMXVRSSD 448
MRGAFGKP GTVARV I Q I+ +R+ D
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKD 28
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 322 IDADNVERVKSHADMELILSAVLTRYLLQQIRPASKASELSCSYSSDTK 176
+ A+ V+R+ SH M+ + S + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 256 LTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 116
L Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 249 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 256 LTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 116
L Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1017 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 28 GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 162
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 219 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 103
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 416 QCXHVLQYPKACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 276
+C V Q P AC + S GA + Y C K V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 51 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 230
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 231 IC 236
+C
Sbjct: 500 MC 501
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + +++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 726 LICSKQKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLS 334
KN +D +RM +HP H IRIN ++S
Sbjct: 127 KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 229 RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 116
R +S+ S+ SC+ S + SGK + LF KS+ R
Sbjct: 983 RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020
>SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11)
Length = 520
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ +++ D T+ST + ++C + ++L+G RL
Sbjct: 466 LICSKPKLRTLTGKDLTVSTENGQLECVNEVKLLGIRL 503
>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
Length = 314
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 312 ITWKG*SLMRIWN*SFPQFLRGT 244
I WKG S M +WN S+ + G+
Sbjct: 241 IAWKGQSSMGLWNSSYANMINGS 263
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 201 AVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 94
A+ TP+ R E+RQR+ ++ RR S D ++P
Sbjct: 102 AIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 210 LSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 70
LS ++I P S SR +S P R + +HPD S SDT
Sbjct: 140 LSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
Length = 270
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 160 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 197
>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
Length = 552
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 349 LICSRPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 386
>SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 2 LICSKPKLRKLAGKDLTVSTENGQLECVNKVKLLGIRL 39
>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 252
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 49 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 86
>SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 228
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 100 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 137
>SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 169
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 12 LICSKPKLRKLAGKDLTVSTENGQLECVNKVKLLGIRL 49
>SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 323
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 126 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 163
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 11/55 (20%)
Frame = -2
Query: 328 HFIDADNVERVKSHA--DMELI---LSAVLTRYLLQQ------IRPASKASELSC 197
H I++++VE++K HA ++E + LSA R+LL+ + PA K +L C
Sbjct: 777 HLINSNDVEKLKQHALCNLEFLSSKLSATSPRHLLEDFADALGVFPADKDIKLVC 831
>SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 252
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 12 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 49
>SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)
Length = 309
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 249 LVRTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 362
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 147 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,890
Number of Sequences: 59808
Number of extensions: 342166
Number of successful extensions: 1111
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -