Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0470
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   143   5e-35
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.8  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   4.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   4.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   4.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  143 bits (347), Expect = 5e-35
 Identities = 63/78 (80%), Positives = 68/78 (87%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 204 SSEALEAGRICCNKYLVR 257
           SSEALEA RIC NKY+V+
Sbjct: 61  SSEALEAARICANKYMVK 78



 Score =  101 bits (243), Expect = 2e-22
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +2

Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
           KNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKP G VARV I   +  
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 434 VR 439
           +R
Sbjct: 138 MR 139


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 387 GLPNAPRIPVWSLSAPA 337
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 84  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 230
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -1

Query: 269 PFRSSYEVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 90
           P ++  E  ++AD S LQ    QL   + H V   + +    +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIPV--ALLCSILGTIVRFCYSDD 281

Query: 89  EPRFRIRFIFAVP 51
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 5    RHEKDHHGAPASEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 127
            R+ ++  G   S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1031 RNLENFEGFLDSKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 5    RHEKDHHGAPASEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 127
            R+ ++  G   S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1002 RNLENFEGFLDSKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 5    RHEKDHHGAPASEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 127
            R+ ++  G   S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1002 RNLENFEGFLDSKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 146 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 45
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 146 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 45
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 146 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 45
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,201
Number of Sequences: 27780
Number of extensions: 241896
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)