Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0470
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   136   5e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   136   5e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   136   7e-33
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   2.6  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   4.5  
At3g43920.1 68416.m04701 ribonuclease III family protein similar...    27   6.0  
At1g53180.1 68414.m06027 expressed protein                             27   6.0  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   7.9  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  136 bits (330), Expect = 5e-33
 Identities = 60/80 (75%), Positives = 68/80 (85%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 204 SSEALEAGRICCNKYLVRTA 263
           SSEALEA RI CNKY+V++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  104 bits (249), Expect = 3e-23
 Identities = 47/65 (72%), Positives = 54/65 (83%)
 Frame = +2

Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
           K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV I Q ++ 
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 434 VRSSD 448
           VR  D
Sbjct: 138 VRCKD 142


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  136 bits (330), Expect = 5e-33
 Identities = 60/80 (75%), Positives = 68/80 (85%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 204 SSEALEAGRICCNKYLVRTA 263
           SSEALEA RI CNKY+V++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  104 bits (249), Expect = 3e-23
 Identities = 47/65 (72%), Positives = 54/65 (83%)
 Frame = +2

Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
           K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV I Q ++ 
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 434 VRSSD 448
           VR  D
Sbjct: 138 VRCKD 142


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  136 bits (329), Expect = 7e-33
 Identities = 60/80 (75%), Positives = 68/80 (85%)
 Frame = +3

Query: 24  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 203
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 204 SSEALEAGRICCNKYLVRTA 263
           SSEALEA RI CNKY+V++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  104 bits (249), Expect = 3e-23
 Identities = 47/65 (72%), Positives = 54/65 (83%)
 Frame = +2

Query: 254 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP*GTVARVRIXQPIMX 433
           K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV I Q ++ 
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 434 VRSSD 448
           VR  D
Sbjct: 138 VRCKD 142


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 183  SDEYEQLSSEALEAGRICCNKYLV 254
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 132 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 25
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 322  IDADNVERVKSHADMELILSAVLTRYLLQQIRPASKASEL--SCSYSSDTKCTHSGKSST 149
            +D D V RV      E +LS ++T   LQ + P  + +EL  S  Y    KC++ G  + 
Sbjct: 1292 LDLDQVWRV-----FEPLLSPLVTPDKLQ-LPPYRELNELCDSLGYFFRVKCSNDGVKAQ 1345

Query: 148  VALFLPKSKIRILGSGTPRQN 86
              + L    + + G G+ + N
Sbjct: 1346 ATIQLQLDDVLLTGDGSEQTN 1366


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 33  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 137
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  VPDPKIRIFDLGKKRATVDDFPL 167
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,382
Number of Sequences: 28952
Number of extensions: 231276
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)