Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0466
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       58   3e-09
07_01_0756 + 5819367-5820038,5820847-5821005                           58   4e-09
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    27   8.0  
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979           27   8.0  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +3

Query: 150 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYR 329
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+K    ++           ++    +
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK-EHQIVETLVPGLKDEVMKITPVQ 96

Query: 330 NKHVPDXXTRFKAFV 374
            +      TRFKAFV
Sbjct: 97  KQTRAGQRTRFKAFV 111


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 23/36 (63%), Positives = 32/36 (88%)
 Frame = +3

Query: 150 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+K
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76



 Score = 37.1 bits (82), Expect = 0.006
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +2

Query: 254 QEFEIIDXFLGPSLNDEVLKIMPVQKQTRAXXXHTFQ 364
           +E +I++  + P L DEV+KI PVQKQTRA     F+
Sbjct: 76  KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFK 111


>07_03_1615 -
           28157237-28157472,28157649-28157728,28157853-28158009,
           28158379-28158565,28158646-28158772,28159218-28159805,
           28159898-28160443,28161579-28161620,28162081-28162145,
           28162273-28162377,28162682-28162741,28163149-28163237,
           28163611-28163732,28163862-28163968,28164041-28164111,
           28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 329 KQTRAXXXHTFQGICLPLSTTTVIFGFGCE 418
           KQT A   H + G+C+ L   TV+   G +
Sbjct: 881 KQTFAIRGHLYFGLCITLVLETVVIKLGAD 910


>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
          Length = 361

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 135 HGRDHDRVHEDRHGLYLH 82
           H RDH R+    HG YLH
Sbjct: 5   HDRDHVRLRSRVHGTYLH 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,062,362
Number of Sequences: 37544
Number of extensions: 153134
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)