Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0466
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   3e-09
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   0.67 

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +2

Query: 218 QTREHLLVF-FTNQEFEIIDXFLGPSLNDEVLKIMPVQKQTRAXXXHTFQ 364
           +T EH+ +F    +EFEIID FLG +L DEVLKIMPVQKQTRA     F+
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFK 73



 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 33/69 (47%), Positives = 39/69 (56%)
 Frame = +3

Query: 168 WVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNKHVPD 347
           WVPVTKLGRLV++ KI  LE IYLFSLPIK    +  F         L+    + +    
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 348 XXTRFKAFV 374
             TRFKAFV
Sbjct: 68  QRTRFKAFV 76


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 192 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 82
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,758,124
Number of Sequences: 59808
Number of extensions: 186830
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)