Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0466
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    56   1e-08
Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    27   5.5  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   7.2  
U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 34/74 (45%), Positives = 40/74 (54%)
 Frame = +3

Query: 153 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRN 332
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK    +I           L+    + 
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEF-EIIDALCSNLKDEVLKISPVQK 110

Query: 333 KHVPDXXTRFKAFV 374
           +      TRFKAFV
Sbjct: 111 QTTAGQRTRFKAFV 124


>Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical
           protein C44C10.8 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 167 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQEFEIIDXFLGPSLNDEVLKIMPVQKQTR 340
           V S   T    SR++  + +EH      N  FEI+   + P L  E  K +P  K  R
Sbjct: 12  VSSLESTDSKKSRKEKSREKEHRRAQCINSAFEILQQHI-PYLKSEERKSLPKIKTLR 68


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 147 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQR 28
           R+ D  RD DR + DR   Y  +    RRE     R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 155  RPERVGSCHQTRPSCSRRKNRQTREHLLVFFTNQEFEIIDXFLGPSLNDEVLKIMP 322
            RP R G    T+PS SRR  + T    +    + +F  I   LG +L    + ++P
Sbjct: 2145 RPHRAGKGTITKPSGSRRGAQMTVARTVSIPFSSDFSGIRMRLGTTLASTSVGVIP 2200


>U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical
           protein C09B9.8 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 402 NMTVVVDNGKQMP*NVXXCXARVCFCTGMILRTSSFR 292
           N+T +V  G+    ++  C  R   C G  + TSS R
Sbjct: 150 NLTQLVSGGRPEESSINVCSCRGPLCNGSTINTSSTR 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,837,074
Number of Sequences: 27780
Number of extensions: 134414
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)