Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0466
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 61 3e-10
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 56 7e-09
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 56 7e-09
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 56 7e-09
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 56 7e-09
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 54 5e-08
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 1.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 2.2
At3g63100.1 68416.m07087 glycine-rich protein 28 2.9
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 3.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 3.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 3.8
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 26 8.9
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 26 8.9
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 61.3 bits (142), Expect = 3e-10
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K + +I P + + + K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQ-IIDLLVGPSLKDEVMKIMPVQK 99
Query: 336 HV-PDXXTRFKAFV 374
TRFKAF+
Sbjct: 100 QTRAGQRTRFKAFI 113
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 56.4 bits (130), Expect = 7e-09
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++ +WVPVTKLGRLV + KI KLE IYL SLP+K + +I P + + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 336 HV-PDXXTRFKAFV 374
TRFKAFV
Sbjct: 108 QTRAGQRTRFKAFV 121
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 56.4 bits (130), Expect = 7e-09
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++ +WVPVTKLGRLV + KI KLE IYL SLP+K + +I P + + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 336 HV-PDXXTRFKAFV 374
TRFKAFV
Sbjct: 108 QTRAGQRTRFKAFV 121
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 56.4 bits (130), Expect = 7e-09
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++ +WVPVTKLGRLV + KI KLE IYL SLP+K + +I P + + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 336 HV-PDXXTRFKAFV 374
TRFKAFV
Sbjct: 108 QTRAGQRTRFKAFV 121
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 56.4 bits (130), Expect = 7e-09
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++ +WVPVTKLGRLV + KI KLE IYL SLP+K + +I P + + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 336 HV-PDXXTRFKAFV 374
TRFKAFV
Sbjct: 108 QTRAGQRTRFKAFV 121
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 53.6 bits (123), Expect = 5e-08
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKNSRSLIXFSARP*MMRFLRSCLYRNK 335
++++WVPVTKLGRLV G I ++E IYL SLP+K + +I P + + + K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQ-IIDMLIGPTLKDEVMKIMPVQK 108
Query: 336 HV-PDXXTRFKAFV 374
TRFKAFV
Sbjct: 109 QTRAGQRTRFKAFV 122
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 141 HDHGRDHDRVHEDRHGLYLH 82
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 141 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRLEQRXPLLN 13
HDHG HD H HG Y R ++ +++ + + + L+
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNINVQGAYLH 201
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 135 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 43
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRXPLLNSCRI 1
RDHDR +DR G R R R ++R R R P + R+
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSPSKSKQRV 171
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRXPLLNSCRI 1
RDHDR +DR G R R R ++R R R P + R+
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSPSKSKQRV 171
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRXPLLNSCRI 1
RDHDR +DR G R R R ++R R R P + R+
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSPSKSKQRV 171
>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 357
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 156 LPCRAHDHGRD--HDRVHEDRHGLYLHRVIRI 67
LP +H H + HDR+H D H L H V +I
Sbjct: 69 LPSCSHHHIQSLLHDRLHRDDHWLCDHLVPKI 100
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 141 HDHGRDHDRVHEDRHG 94
HDHG H H++ HG
Sbjct: 198 HDHGHGHGHSHDNGHG 213
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 141 HDHGRDHDRVHEDRHG 94
HDHG H H++ HG
Sbjct: 237 HDHGHGHGHSHDNGHG 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,318,314
Number of Sequences: 28952
Number of extensions: 124779
Number of successful extensions: 360
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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