Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0465
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   118   5e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   118   5e-28
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.24 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.31 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.41 
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   2.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   2.2  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   5.1  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   5.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   8.9  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    24   8.9  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    24   8.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   8.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  118 bits (283), Expect = 5e-28
 Identities = 51/75 (68%), Positives = 66/75 (88%)
 Frame = +2

Query: 26  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 206 ARVRKNTEARRKGRH 250
            R+RK   A+R GRH
Sbjct: 61  FRIRKTHAAKRLGRH 75



 Score = 31.1 bits (67), Expect = 0.078
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R   KID+HL H+LY++AKG
Sbjct: 110 RESGKIDKHLYHTLYLEAKG 129



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 FGKRRGTANARMPQKELW 309
           +GKR+GTA ARMP   +W
Sbjct: 78  YGKRKGTAEARMPSTVVW 95


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  118 bits (283), Expect = 5e-28
 Identities = 51/75 (68%), Positives = 66/75 (88%)
 Frame = +2

Query: 26  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 206 ARVRKNTEARRKGRH 250
            R+RK   A+R GRH
Sbjct: 61  FRIRKTHAAKRLGRH 75



 Score = 31.1 bits (67), Expect = 0.078
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R   KID+HL H+LY++AKG
Sbjct: 110 RESGKIDKHLYHTLYLEAKG 129



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 FGKRRGTANARMPQKELW 309
           +GKR+GTA ARMP   +W
Sbjct: 78  YGKRKGTAEARMPSAVVW 95


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 228 SVFLRTRAREWTATGFLMTRPSLIILRMFC 139
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 169 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 80
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 148 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 53
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 299 FCGIRALAVPLLLPKHSDDPFYVPLCF 219
           +  I  L   + L KH DD  YVPL F
Sbjct: 336 YFSIENLCKDMFLRKHMDDEGYVPLAF 362


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 280 WQYLFSYQSTVTTLSTCLCVFADTGAGVDCYRFLDDE 170
           WQYLF  +  VT L   + +F      V+   FL DE
Sbjct: 219 WQYLFLIEGGVTFL-CAIVIFLVLPVSVETANFLTDE 254


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 304 VPSVAYAHWQYLFSYQS 254
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +2

Query: 86  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 232
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 233 RRKGR 247
           R+  R
Sbjct: 349 RKSLR 353


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 29  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 154
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 128  TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 226
            T S   ++ +IK+    +KP    ++++++KN+
Sbjct: 912  TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 17  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 121
           +++    K  K L +S+        W D NE+NE+
Sbjct: 12  KIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 140 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 244
           +++R  +KD +   +PV+V S A   ++T     G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNG 175


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 38   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 169
            +L +RLAA + RC  ++ W D          +   NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,360
Number of Sequences: 5004
Number of extensions: 38028
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)