Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0465
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 121 3e-28
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 120 7e-28
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 1.2
04_04_1687 - 35365766-35366356,35367137-35368135 29 2.2
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 2.2
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 28 2.9
04_03_0266 + 13648287-13649099,13649186-13649524 28 2.9
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 28 2.9
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 3.8
07_03_1377 + 26155030-26155671 28 3.8
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 3.8
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 5.0
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 5.0
12_02_0584 + 20819822-20820970,20821394-20821618,20821776-208219... 27 8.7
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 27 8.7
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 121 bits (291), Expect = 3e-28
Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +2
Query: 26 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 206 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 301
+R R+ EA++KGRH RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 34.3 bits (75), Expect = 0.043
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 223 HRGT*KGSSLCFGKRRGTANARMPQKELW 309
H KG +GKRRGT AR+P K LW
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILW 95
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 351 RTXKKIDRHLXHSLYMKAKG 410
R KKID+H+ H +YMK KG
Sbjct: 110 REAKKIDKHMYHDMYMKVKG 129
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 120 bits (288), Expect = 7e-28
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +2
Query: 26 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 206 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 301
+R R+ EA++KGRH RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 34.3 bits (75), Expect = 0.043
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 223 HRGT*KGSSLCFGKRRGTANARMPQKELW 309
H KG +GKRRGT AR+P K LW
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILW 95
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 351 RTXKKIDRHLXHSLYMKAKG 410
R KKID+H+ H +YMK KG
Sbjct: 110 REAKKIDKHMYHDMYMKVKG 129
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 145 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 14
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 175 HQETCSSPLPRPCPQKHR 228
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 14 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 184
+RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 41 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 211
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 212 VRKNTEARRKGR 247
+ T RKGR
Sbjct: 806 DEETTSISRKGR 817
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 80 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 226
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 41 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 211
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 212 VRKNTEARRKGR 247
+ T RKGR
Sbjct: 757 DEETTSISRKGR 768
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 95 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 199
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>07_03_1377 + 26155030-26155671
Length = 213
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 334 FLEPFVFVP-IVPSVAYAHWQYLFSYQSTVTTLSTCLCVFADTGAGVDC 191
F EP + +P IV +A A + +SY S + + + L A GA V C
Sbjct: 20 FREPLLLIPYIVGFLAAASSGFFYSYSSFLHSFARSLVPAAAAGAVVKC 68
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 26 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 206 ARVRKNTEARRK 241
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 175
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 80 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 241
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
>12_02_0584 +
20819822-20820970,20821394-20821618,20821776-20821907,
20822511-20822534
Length = 509
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 208 GAGVDCYRFLDDETILDHLTDVLSGVGVCDLI 113
GAG D YR L D + + D GV +C+L+
Sbjct: 209 GAGADAYRSLADLLLSNVCLDDGDGVRLCNLL 240
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 84 RRCGWIQMKSMRSQTPTP 137
RR GW M +MR Q P P
Sbjct: 235 RRSGWSDMDAMRRQVPPP 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,200
Number of Sequences: 37544
Number of extensions: 280571
Number of successful extensions: 749
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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