Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0465
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              130   4e-31
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                28   2.9  
SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)                    28   2.9  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    28   3.9  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              27   6.8  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     27   8.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  130 bits (315), Expect = 4e-31
 Identities = 58/78 (74%), Positives = 69/78 (88%)
 Frame = +2

Query: 17  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 196
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 197 HSRARVRKNTEARRKGRH 250
           HSRARVRK  EAR KGRH
Sbjct: 86  HSRARVRKADEARSKGRH 103



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +1

Query: 238 KGSSLCFGKRRGTANARMPQKELW 309
           KG     GKR+GTANARMPQK +W
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIW 123



 Score = 35.1 bits (77), Expect = 0.026
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R  KKID H+ HSLYMK+KG
Sbjct: 138 REAKKIDNHMYHSLYMKSKG 157


>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 326 TLCLCTHSSFCGIRALAVPLLLPKHSDDPFYVPLCFCGHG 207
           TLC+  H S C    L + L +  HS     + LC  GHG
Sbjct: 408 TLCIGGHGSAC----LTITLCIGGHSSACLTITLCIGGHG 443


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 152 KMIKD-GLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRV 289
           K++++ GL+  +   V  RA + + +E R+K R CA + +  LP+R+
Sbjct: 449 KLLQELGLLRDEAYRVEDRAALAQVSELRKKLRECAPLDKSGLPLRL 495


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 59  ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEAR 235
           A+V   G ++   +P  EINE ANT +   I +   +G V+ +PV V     V+K   +R
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVL-EPVEV-----VQKGKRSR 560

Query: 236 RKGRHCALVREEVLPMRV 289
           RK R   +  E++L   V
Sbjct: 561 RK-RKLIVDEEKILSTEV 577


>SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)
          Length = 245

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 152 KMIKD-GLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRV 289
           K++++ GL+  +   V  RA + + +E R+K R CA + +  LP+R+
Sbjct: 143 KLLQELGLLRDEAYRVEDRAALAQVSELRKKLRECAPLDKSGLPLRL 189


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 131 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCALVRE 268
           +S  NIRK IKDG   K   P    S  +VRK +  RR   + + V++
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKK 142


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 281 LAVPLLLPKHSDDPFYVPLCFCGHGRGSGL 192
           +AV    P+ +D+P +VPL   G  RGS L
Sbjct: 191 IAVVKQCPRGTDEPSFVPLMKTGFDRGSYL 220


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 191 AVHSRARVRKNTEARRKG-RHCALVREEVLPMRVCHRRNYGYKD 319
           A+  R + R+  + RR+  + CAL+  E   +R     N  Y+D
Sbjct: 270 ALEDRLQDRQRVKTRREAEKQCALIHREQEVIRALEHMNSSYED 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,384
Number of Sequences: 59808
Number of extensions: 312631
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)