Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0465
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   116   7e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   114   2e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   113   4e-26
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   3.2  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   3.2  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    28   3.2  
At5g24410.1 68418.m02877 glucosamine/galactosamine-6-phosphate i...    27   5.5  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    26   9.7  
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ...    26   9.7  
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ...    26   9.7  
At2g40420.1 68415.m04985 amino acid transporter family protein s...    26   9.7  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  116 bits (279), Expect = 7e-27
 Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
 Frame = +2

Query: 26  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 206 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 301
           +R R   EA+RKGRH         RE  LP ++   R
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMR 97



 Score = 34.3 bits (75), Expect = 0.036
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R  KKIDRH+ H +YMK KG
Sbjct: 110 RESKKIDRHMYHDMYMKVKG 129



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 238 KGSSLCFGKRRGTANARMPQKELW 309
           KG    +GKR+GT  AR+P K LW
Sbjct: 72  KGRHSGYGKRKGTREARLPTKILW 95


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  114 bits (275), Expect = 2e-26
 Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
 Frame = +2

Query: 26  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 206 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 301
           +R RK   A+ KGRH         RE  LP +V   R
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMR 97



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 238 KGSSLCFGKRRGTANARMPQKELW 309
           KG    +GKR+GT  AR+P K LW
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLW 95



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R  KKID+H+ H +YM+ KG
Sbjct: 110 RETKKIDKHMYHDMYMRVKG 129


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  113 bits (273), Expect = 4e-26
 Identities = 55/97 (56%), Positives = 71/97 (73%), Gaps = 5/97 (5%)
 Frame = +2

Query: 26  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 205
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 206 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 301
           +R R+   A+RKGRH         RE  LP +V   R
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMR 97



 Score = 34.3 bits (75), Expect = 0.036
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 351 RTXKKIDRHLXHSLYMKAKG 410
           R  KKIDRH+ H +YMK KG
Sbjct: 110 RETKKIDRHMYHDMYMKVKG 129



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 238 KGSSLCFGKRRGTANARMPQKELW 309
           KG    +GKR+GT  AR+P K LW
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLW 95


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 186 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 91
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 102 GSNHTFFLPHRITEAASLFCSLRELI 25
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 5   TRSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 169
           T     + S+  L++   AS+     K++  + N  +EIA T+  Q+  K  KDG
Sbjct: 242 TADSETKCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296


>At5g24410.1 68418.m02877 glucosamine/galactosamine-6-phosphate
           isomerase-related contains weak similarity to
           Swiss-Prot:O95336 6-phosphogluconolactonase (EC
           3.1.1.31) (6PGL) [Homo sapiens]
          Length = 261

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 152 KMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRVCHRRNYGYKDKGF 328
           K+  DG + K P+ + +   + K+  A    +  AL+ EE L   V       YK  GF
Sbjct: 93  KLAFDGFLSKVPIPIANIYPIDKDCAALGDAKSAALLYEECLKRLVNRNIIRTYKSSGF 151


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 275 VPLLLPKHSDDPFYVPLCFCGHGR 204
           +P L   H  DP Y  +CF G GR
Sbjct: 314 IPSLKRIHGPDPNYDDVCFSGAGR 337


>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
           (UBC9) E2; identical to gi:297883, SP:P35132; identical
           to cDNA UBC9 for ubiquitin conjugating enzyme homolog
           GI:297883
          Length = 178

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 388 EWXRCLSIFLXVLTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSTVTT 242
           +W   L+I   +L+  ++  +P    P+VP +A+ +      Y+ST  T
Sbjct: 122 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTART 170


>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
           (UBC9) E2; identical to gi:297883, SP:P35132; identical
           to cDNA UBC9 for ubiquitin conjugating enzyme homolog
           GI:297883
          Length = 148

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 388 EWXRCLSIFLXVLTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSTVTT 242
           +W   L+I   +L+  ++  +P    P+VP +A+ +      Y+ST  T
Sbjct: 92  QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTART 140


>At2g40420.1 68415.m04985 amino acid transporter family protein
           similar to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 440

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 364 FLXVLTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSTVTTLSTCLCVFADTGAGVDCYR 185
           F  + T+  + +  F F   V  VA+     L    +T  ++  C  +++ TG  + CY 
Sbjct: 223 FFSLFTASPVIVTAFTFHFNVHPVAFELKDPLNVLSATRISVILCATIYSATG--LFCYL 280

Query: 184 FLDDETILDHL 152
              D T+ D L
Sbjct: 281 LFGDSTMTDVL 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,537
Number of Sequences: 28952
Number of extensions: 212995
Number of successful extensions: 544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)