Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0464
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q89ZM1 Cluster: Putative anti-sigma factor; n=6; Bacter...    32   5.9  
UniRef50_Q9JRR1 Cluster: Orf14 protein; n=1; Aggregatibacter act...    32   5.9  
UniRef50_A0MSS5 Cluster: Putative uncharacterized protein; n=1; ...    32   7.8  
UniRef50_A3H5N0 Cluster: Serine/threonine protein kinase; n=1; C...    32   7.8  

>UniRef50_Q89ZM1 Cluster: Putative anti-sigma factor; n=6;
           Bacteroides|Rep: Putative anti-sigma factor -
           Bacteroides thetaiotaomicron
          Length = 342

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 110 EFRRIQISQRRNFEIEKKKRKDF-LETSFYSQLYTLSICF 226
           +FR++++S    FE+ K   K F L T+  SQ+  L  CF
Sbjct: 157 DFRKVKLSGEAYFEVAKDPEKKFILSTTHQSQIEVLGTCF 196


>UniRef50_Q9JRR1 Cluster: Orf14 protein; n=1; Aggregatibacter
           actinomycetemcomitans|Rep: Orf14 protein -
           Actinobacillus actinomycetemcomitans
           (Haemophilusactinomycetemcomitans)
          Length = 246

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +1

Query: 190 FLFTIVHVIYLFHILSIACLM*VYTMIDSLNHRYIDALNIRI*VIALKFNRSFIIIIRFC 369
           ++ T+  + YLF +  I     V  +      ++I  +++   +  L  N+S++++  +C
Sbjct: 108 YILTVGKISYLFILTYIIITFIVTLLFKHYIRKHISTISLNTTITFLYRNKSYVMLSTYC 167

Query: 370 YFI 378
           YF+
Sbjct: 168 YFV 170


>UniRef50_A0MSS5 Cluster: Putative uncharacterized protein; n=1;
           Spodoptera exigua ascovirus 5a|Rep: Putative
           uncharacterized protein - Spodoptera exigua ascovirus 5a
          Length = 102

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 318 LYSDVKSIDISMVKRVNHCVNSHKTSYAQNVKQIDNVYN 202
           + SDVKSI    V +V+    S K S A  +KQ+ N+YN
Sbjct: 63  IVSDVKSIKTDTVAKVSELATSAK-SMASEMKQLVNIYN 100


>UniRef50_A3H5N0 Cluster: Serine/threonine protein kinase; n=1;
           Caldivirga maquilingensis IC-167|Rep: Serine/threonine
           protein kinase - Caldivirga maquilingensis IC-167
          Length = 528

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 298 ALNIRI*VIALKFNRSFIIIIRFCYFINLILLFPFQ*NK*NINGIFLLL 444
           AL + +  + + FN S I+II     +  +LLFPF  N   I+ ++L L
Sbjct: 21  ALAVLVTAVGITFNESMIMIIATTLTMLPVLLFPFAKNYATISALYLAL 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,488,744
Number of Sequences: 1657284
Number of extensions: 4995089
Number of successful extensions: 13050
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13045
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)