Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0464
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 386 YCFFLFNKINEILTVFFYYYRMMYL 460
           YC F+   ++ +L  +++YY  + L
Sbjct: 86  YCPFIIFTVHFLLCTYYFYYAFIIL 110



 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 190 FLFTIVHVIYLFHILSIACLM*VYTM 267
           F+   VH+++L  I    C   ++TM
Sbjct: 153 FIIFTVHLLFLLCIYHFFCAFIIFTM 178



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 386 YCFFLFNKINEILTVFFYYYRMMYL 460
           Y F LF     +L   +Y+Y M  L
Sbjct: 243 YAFILFTVHLLLLVCIYYFYYMHLL 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,971
Number of Sequences: 336
Number of extensions: 1586
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)