Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0464
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968...    31   0.37 
01_05_0399 - 21784997-21785284,21785450-21785603,21786444-217866...    29   2.6  
12_01_0647 - 5485100-5487028                                           28   4.5  

>03_02_0591 -
           9682476-9682487,9682805-9682885,9683085-9683192,
           9683307-9683383,9683495-9683603,9683696-9683794,
           9684208-9684294,9684454-9684514,9684646-9684720,
           9684826-9684854
          Length = 245

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   TRLYLAIRCTYVWNLWIARRFYEVIGNELKI 101
           TRLY+A  C Y    WIAR  Y+ + +++KI
Sbjct: 34  TRLYVAYHCPYAQRAWIARN-YKGLQDKIKI 63


>01_05_0399 -
           21784997-21785284,21785450-21785603,21786444-21786687,
           21786790-21787036
          Length = 310

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 36  TYVWNLWIARRFYEVIGNELKI 101
           TY WN+W  RR+ E++   L++
Sbjct: 214 TYAWNIWSNRRYNELLDPYLRV 235


>12_01_0647 - 5485100-5487028
          Length = 642

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 95  ENLKLEFRRIQISQRRNFEIEKKKRKDFLETSFYSQLYTLSICFTF 232
           +NL  E+ R  +    NF+    +    L+ S+YS L  L +CF +
Sbjct: 414 DNLTAEYWRKFLQYVDNFQRTTTRDMAVLKVSYYSLLPELQVCFRY 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,726,486
Number of Sequences: 37544
Number of extensions: 114597
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)