Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0464
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-...    28   2.9  
At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH) domain...    27   8.8  

>At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-1
           protein, Zea mays, P49248
          Length = 292

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   TRLYLAIRCTYVWNLWIARRFYEVIGNELKI 101
           TRLY++  C +    WIAR  Y+ + N++++
Sbjct: 81  TRLYISYTCPFAQRAWIARN-YKGLQNKIEL 110


>At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to clathrin assembly protein short form, Rattus
           norvegicus, EMBL:AF041373;similar to Chain A, Calm-N
           N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid
           Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo
           sapiens}
          Length = 544

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 312 SDVKSIDISMVKRVNHCVNSHKTSYAQNV 226
           SD K +DI++VK  NH     K  Y + +
Sbjct: 31  SDYKELDIAIVKATNHVERPSKERYIRAI 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,733,391
Number of Sequences: 28952
Number of extensions: 109872
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)