Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0460
(407 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50991 Cluster: T-complex protein 1 subunit delta; n=13... 43 0.002
UniRef50_Q4PBE2 Cluster: T-complex protein 1, delta subunit; n=1... 42 0.004
UniRef50_A2Z9B2 Cluster: T-complex protein 1, delta subunit; n=1... 38 0.10
UniRef50_P48643 Cluster: T-complex protein 1 subunit epsilon; n=... 36 0.42
UniRef50_A6S086 Cluster: Putative uncharacterized protein; n=1; ... 33 1.7
UniRef50_P50016 Cluster: Thermosome subunit; n=20; Archaea|Rep: ... 33 1.7
UniRef50_Q9V2Q7 Cluster: Thermosome subunit; n=20; Euryarchaeota... 32 5.1
UniRef50_Q8THU8 Cluster: Hsp60; n=4; Archaea|Rep: Hsp60 - Methan... 31 6.8
>UniRef50_P50991 Cluster: T-complex protein 1 subunit delta; n=138;
Eukaryota|Rep: T-complex protein 1 subunit delta - Homo
sapiens (Human)
Length = 539
Score = 43.2 bits (97), Expect = 0.002
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
PSTLAENAGLNPI TVTEL +++ E V+ PL V+ SAL
Sbjct: 462 PSTLAENAGLNPISTVTEL-RNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALT 520
Query: 250 LA 255
LA
Sbjct: 521 LA 522
>UniRef50_Q4PBE2 Cluster: T-complex protein 1, delta subunit; n=1;
Ustilago maydis|Rep: T-complex protein 1, delta subunit
- Ustilago maydis (Smut fungus)
Length = 574
Score = 42.3 bits (95), Expect = 0.004
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P+TLAENAGLNPI VTEL T++ E+VL PL V SA+
Sbjct: 497 PTTLAENAGLNPISIVTEL-RNRHALGERTAGINVRKGQITNILEENVLQPLLVNTSAIE 555
Query: 250 LA 255
LA
Sbjct: 556 LA 557
>UniRef50_A2Z9B2 Cluster: T-complex protein 1, delta subunit; n=1;
Oryza sativa (indica cultivar-group)|Rep: T-complex
protein 1, delta subunit - Oryza sativa subsp. indica
(Rice)
Length = 517
Score = 37.5 bits (83), Expect = 0.10
Identities = 24/62 (38%), Positives = 32/62 (51%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P TL+ENAGL+PI VTEL T++ E+V+ PL V+ SA+
Sbjct: 440 PYTLSENAGLDPISIVTEL-RNRHAKGEKNAGINVRKGRITNILEENVVQPLLVSTSAIT 498
Query: 250 LA 255
LA
Sbjct: 499 LA 500
>UniRef50_P48643 Cluster: T-complex protein 1 subunit epsilon;
n=123; Eukaryota|Rep: T-complex protein 1 subunit
epsilon - Homo sapiens (Human)
Length = 541
Score = 35.5 bits (78), Expect = 0.42
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P L+EN+G+NPI+T+TE+ DM+ +HV+ L ++
Sbjct: 459 PMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQIS 518
Query: 250 LA 255
LA
Sbjct: 519 LA 520
>UniRef50_A6S086 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 444
Score = 33.5 bits (73), Expect = 1.7
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P LAEN+GL+ IET+ + DMR V+ PL L
Sbjct: 360 PMALAENSGLSSIETLASVKSRQATEKNTRLGVDCMQTGSNDMRDAFVIDPLIGKKQQLM 419
Query: 250 LAPXLC 267
LA LC
Sbjct: 420 LATQLC 425
>UniRef50_P50016 Cluster: Thermosome subunit; n=20; Archaea|Rep:
Thermosome subunit - Methanopyrus kandleri
Length = 545
Score = 33.5 bits (73), Expect = 1.7
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P TLAEN+GL+PI+ + +L DM E V+ PL V ALA
Sbjct: 450 PRTLAENSGLDPIDVLVQL-RAKHEDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALA 508
Query: 250 LA 255
A
Sbjct: 509 SA 510
>UniRef50_Q9V2Q7 Cluster: Thermosome subunit; n=20;
Euryarchaeota|Rep: Thermosome subunit - Pyrococcus
abyssi
Length = 550
Score = 31.9 bits (69), Expect = 5.1
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTEL 126
P TLAENAGL+PIET+ ++
Sbjct: 448 PRTLAENAGLDPIETLVKV 466
>UniRef50_Q8THU8 Cluster: Hsp60; n=4; Archaea|Rep: Hsp60 -
Methanosarcina acetivorans
Length = 543
Score = 31.5 bits (68), Expect = 6.8
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 70 PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
P TLAENAGL+PI+ + E+ DM +V+ PL + A+
Sbjct: 446 PQTLAENAGLDPIDMLVEM-RSQHEKGNKRAGLNVYTGKIEDMFENNVVEPLRIKTQAIN 504
Query: 250 LAPXLCVL 273
A ++
Sbjct: 505 AATEAAIM 512
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,755,891
Number of Sequences: 1657284
Number of extensions: 1747316
Number of successful extensions: 2439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2438
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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