Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0460
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    39   3e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    34   0.010
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    29   0.37 
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   1.1  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 26/62 (41%), Positives = 31/62 (50%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGLN I+ VTEL                     T++  E+VL PL V  SA+ 
Sbjct: 450 PVTLAENAGLNAIQVVTEL-RSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQ 508

Query: 250 LA 255
           LA
Sbjct: 509 LA 510


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P  LAEN+GL+ IE +T +                      DMR + V+ PL      L 
Sbjct: 461 PLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLL 520

Query: 250 LAPXLC 267
           LA  LC
Sbjct: 521 LATQLC 526


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TL +N G NPI+ +TEL
Sbjct: 446 PRTLVQNCGANPIKALTEL 464


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P T++ENAGL+P + +++L
Sbjct: 449 PRTISENAGLDPTDVISKL 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,485
Number of Sequences: 5004
Number of extensions: 7052
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)