Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0460
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0620 - 19321612-19323237                                         41   4e-04
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     41   4e-04
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516...    28   2.5  
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806...    27   5.7  
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118...    27   7.6  

>10_08_0620 - 19321612-19323237
          Length = 541

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGL+PI TVTEL                     T++  E+V+ PL V+ SA+ 
Sbjct: 464 PYTLAENAGLDPISTVTEL-RNRHAKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVT 522

Query: 250 LA 255
           LA
Sbjct: 523 LA 524


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 26/62 (41%), Positives = 32/62 (51%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGLNPI  VTEL                     T++  E+V+ PL V+ SA+ 
Sbjct: 473 PYTLAENAGLNPISIVTEL-RNRHAKGEKNAGINVRKGQITNILEENVVQPLLVSTSAIT 531

Query: 250 LA 255
           LA
Sbjct: 532 LA 533


>06_03_0477 -
           21250811-21250981,21251261-21251374,21251447-21251613,
           21252051-21252153,21252315-21252367,21252438-21252570,
           21252835-21253183,21253685-21254003,21254519-21254717
          Length = 535

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVT 120
           P  LAEN+GL+PI+T+T
Sbjct: 455 PLALAENSGLSPIDTLT 471


>03_06_0362 +
           33379489-33379624,33380161-33380423,33380524-33380670,
           33380753-33380914,33381681-33381758,33382329-33382462,
           33382702-33382774,33382852-33382929,33383002-33383124,
           33383223-33383317,33383723-33383932,33384115-33384172,
           33384268-33384333
          Length = 540

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TLAENAGL+ +E ++ L
Sbjct: 447 PRTLAENAGLSAMEIISSL 465


>06_03_0353 +
           19810945-19810975,19811308-19811369,19811741-19811813,
           19813292-19813359,19813496-19813565,19813908-19813976,
           19814065-19814136,19814247-19814320,19814420-19814697,
           19814804-19815188,19815268-19815393,19815583-19815687,
           19815986-19815994,19817040-19817114,19817202-19817390
          Length = 561

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TLA+N GLN I  +T+L
Sbjct: 450 PRTLAQNCGLNVIRIMTQL 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,322,838
Number of Sequences: 37544
Number of extensions: 51547
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)