Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0460
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   8e-05
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  31   0.36 
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)            31   0.36 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 28/62 (45%), Positives = 33/62 (53%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGLNPI TVTEL                     T++  E+VL PL V+ SA+ 
Sbjct: 142 PYTLAENAGLNPIATVTEL-RNRHAQGEVTAGINVRKGTVTNILEENVLQPLLVSTSAVQ 200

Query: 250 LA 255
           LA
Sbjct: 201 LA 202


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P  LAEN+GLNPI+TV ++
Sbjct: 457 PLALAENSGLNPIQTVADI 475


>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
          Length = 206

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P  LAEN+GLNPI+TV ++
Sbjct: 172 PLALAENSGLNPIQTVADI 190


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TLA+N+G +P ET+ +L
Sbjct: 370 PKTLAQNSGFDPQETMVKL 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,246,261
Number of Sequences: 59808
Number of extensions: 63282
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)