Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0460
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical pr...    44   4e-05
U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.        44   4e-05
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        27   3.9  

>Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical
           protein K01C8.10 protein.
          Length = 540

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 29/62 (46%), Positives = 32/62 (51%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGL+PI TVTEL                     TDM  E V+ PL VTASA+ 
Sbjct: 462 PYTLAENAGLSPIHTVTEL-RNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIK 520

Query: 250 LA 255
            A
Sbjct: 521 QA 522


>U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.
          Length = 540

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 29/62 (46%), Positives = 32/62 (51%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGL+PI TVTEL                     TDM  E V+ PL VTASA+ 
Sbjct: 462 PYTLAENAGLSPIHTVTEL-RNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIK 520

Query: 250 LA 255
            A
Sbjct: 521 QA 522


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P  LAEN+GL PI+ +++L                      DM+ + V+  L      ++
Sbjct: 458 PMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQIS 517

Query: 250 LA 255
           LA
Sbjct: 518 LA 519


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P  LAEN+GL PI+ +++L                      DM+ + V+  L      ++
Sbjct: 458 PMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQIS 517

Query: 250 LA 255
           LA
Sbjct: 518 LA 519


>Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical
           protein C07G2.3b protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P  LAEN+GL PI+ +++L                      DM+ + V+  L      ++
Sbjct: 252 PMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQIS 311

Query: 250 LA 255
           LA
Sbjct: 312 LA 313


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P  LAEN+GL PI+ +++L                      DM+ + V+  L      ++
Sbjct: 458 PMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQIS 517

Query: 250 LA 255
           LA
Sbjct: 518 LA 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,447,700
Number of Sequences: 27780
Number of extensions: 45141
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)