Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0460
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    40   5e-04
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    29   1.2  
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    29   1.2  
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    27   3.7  
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    27   6.4  

>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 26/62 (41%), Positives = 32/62 (51%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPLHVTASALA 249
           P TLAENAGLNPI  VTEL                     T++  E+V+ PL V+ SA+ 
Sbjct: 459 PYTLAENAGLNPIAIVTEL-RNKHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAIT 517

Query: 250 LA 255
           LA
Sbjct: 518 LA 519


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPL 225
           P  LAEN+GL PIET++ +                      DMR ++V   L
Sbjct: 379 PMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETL 430


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTELXXXXXXXXXXXXXXXXXXXXXTDMRTEHVLXPL 225
           P  LAEN+GL PIET++ +                      DMR ++V   L
Sbjct: 455 PMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETL 506


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TLA+NAGLN +E +  L
Sbjct: 452 PKTLADNAGLNAMEIIAAL 470


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  PSTLAENAGLNPIETVTEL 126
           P TLA+N G+N I T+T L
Sbjct: 448 PRTLAQNCGVNVIRTMTAL 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,160,557
Number of Sequences: 28952
Number of extensions: 39354
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)