Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4V9I4 Cluster: Wu:fb02f03 protein; n=8; Eumetazoa|Rep:...    36   0.63 
UniRef50_A1UB28 Cluster: Putative uncharacterized protein; n=2; ...    34   1.5  
UniRef50_UPI00006CBDF1 Cluster: Actin family protein; n=1; Tetra...    32   5.9  
UniRef50_Q84I60 Cluster: OrfB; n=7; Lactobacillales|Rep: OrfB - ...    32   5.9  
UniRef50_Q16FB8 Cluster: Putative uncharacterized protein; n=1; ...    32   5.9  

>UniRef50_Q4V9I4 Cluster: Wu:fb02f03 protein; n=8; Eumetazoa|Rep:
           Wu:fb02f03 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 764

 Score = 35.5 bits (78), Expect = 0.63
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = +1

Query: 418 DPKIEEILAPLRANVKEQGDL 480
           D  IEEILAPLR  VKEQGDL
Sbjct: 82  DGSIEEILAPLRLAVKEQGDL 102


>UniRef50_A1UB28 Cluster: Putative uncharacterized protein; n=2;
           Mycobacterium|Rep: Putative uncharacterized protein -
           Mycobacterium sp. (strain KMS)
          Length = 1123

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 316 FSNHLRLSH-SQQWGSNKLHRKIKIPNPFREIIMADPKIEEILAPL 450
           F   +R  H S++WG + +  ++ +P P REI++A P       PL
Sbjct: 292 FDGDVRQVHPSRRWGGDAMSAQVAVPGPVREIVVAHPSGVNSALPL 337


>UniRef50_UPI00006CBDF1 Cluster: Actin family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Actin family protein
           - Tetrahymena thermophila SB210
          Length = 400

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 229 IDSDNRSQLMRHVLSLVYKCSVFSKQVTVFSNHLRLSHSQQ-WGSNKLHRKIKIPN 393
           I SD   + +   L  V+K  +  + +  F+N+ +++ S + WG+N L R+IK  N
Sbjct: 184 IRSDIAGEYLTKSLGNVWKSKIEPESLNRFTNYAKITQSMKNWGANDLIREIKSRN 239


>UniRef50_Q84I60 Cluster: OrfB; n=7; Lactobacillales|Rep: OrfB -
           Lactobacillus plantarum
          Length = 295

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 16/76 (21%), Positives = 38/76 (50%)
 Frame = +1

Query: 184 GHRPANKIVHMHKLRIDSDNRSQLMRHVLSLVYKCSVFSKQVTVFSNHLRLSHSQQWGSN 363
           G+R    ++H    ++   N  +++R +    + C  F+KQ   ++++       +   N
Sbjct: 64  GYRRITLVMHEQGFKV---NHKRVLRIMKEQGWTCQAFNKQTRKYNSYK--GTIGRIAKN 118

Query: 364 KLHRKIKIPNPFREII 411
           KLHR+ K   P+++++
Sbjct: 119 KLHRRFKTDRPYQKLV 134


>UniRef50_Q16FB8 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 746

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 208 VHMHKLRIDSDNRSQLMRHVLSLVYKCSVFSKQVT 312
           V+ HK R   D+RS    H +S  +KC   S+Q T
Sbjct: 167 VYCHKCRCKFDSRSSFEEHTISCKFKCIFCSRQYT 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,580,863
Number of Sequences: 1657284
Number of extensions: 6620608
Number of successful extensions: 16443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16438
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)