Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   4.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   4.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   6.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 476 SPCSFTLALKGARISSILG-SAIMISRK 396
           SPCSFT+    AR+ S+ G S + + R+
Sbjct: 62  SPCSFTICSLRARLHSLHGPSTVFLKRE 89


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 370 HRKIKIPNPFREIIMADPKIEEILAPLR 453
           HRK+ I +  R+II+ D + E +  PL+
Sbjct: 626 HRKVVISSTARKIIVLDKERERVELPLQ 653


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +1

Query: 199  NKIVHMHKLRIDSD------NRSQLMRHVLSLVYKCSVFSKQVTVFSNHLRLSHSQQWGS 360
            N+I    +++ID +       +S    H  + +Y+  +       + N  + SHS  +GS
Sbjct: 818  NRISTFLRMQIDEECKPCQFKKSNFKEHFQNKIYQEQLDKLNFQKYLNESKCSHSPIYGS 877

Query: 361  NKLHRKIKIP 390
            N +    K+P
Sbjct: 878  NLIRLAEKLP 887


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 364 KLHRKIKIPNPFREIIMADPKIEEILAPLRANVKE 468
           K+ RK+K P     +    P++ + L P+R  ++E
Sbjct: 305 KILRKVKFPFELDAVEFCTPELSQKLIPVRDKLRE 339


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 334 LSHSQQWGSNKLHRKIKIPNPFR 402
           LS+S+++  NK H+K +   PF+
Sbjct: 511 LSNSRRYSRNKFHKKKQSSGPFQ 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,215
Number of Sequences: 5004
Number of extensions: 31149
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)