Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49402| Best HMM Match : WAP (HMM E-Value=8.2e-05)                   31   0.38 
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   31   0.66 
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_51581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_49402| Best HMM Match : WAP (HMM E-Value=8.2e-05)
          Length = 192

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 235 SDNRSQLMRHVLSLVYKCSVFSKQVTVFSN 324
           SD+ +  +R++ SL++KC  FS ++  FSN
Sbjct: 66  SDSSAYTVRYICSLLFKCKYFSTRLIPFSN 95


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 412 MADPKIEEILAPLRANVKEQGDL 480
           MA    EEIL+ LR +VKEQGDL
Sbjct: 1   MASANDEEILSNLRKSVKEQGDL 23


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 187 HRPANKIVHMHKLRIDSDNRSQLMRHVLSLVYKCSV 294
           H P+++  H H+LR+ + +R     HV +LV+  ++
Sbjct: 294 HHPSSRHHHCHRLRLSNHHRPSRYLHVTALVFPITI 329


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118 KDYKADNIYYVSCRKVDLLTP---RGHRPANKIVHMHKLRI 231
           KD    N+ Y +  +VDLLTP    GHRP    + M   RI
Sbjct: 242 KDRVERNLDYRAFVRVDLLTPFAWHGHRPPLLAITMRDARI 282


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 320 VIIYVFHTVSSGAAISFIERLKYR 391
           V+I+VFH+ SSGA  ++  R K +
Sbjct: 194 VVIFVFHSQSSGAKDTYASRAKVK 217


>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1830

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118  KDYKADNIYYVSCRKVDLLTP---RGHRPANKIVHMHKLRI 231
            KD+   ++ Y +  +VDLLTP    GHRP    + M   RI
Sbjct: 1573 KDHAERDLDYRAFVRVDLLTPFAWHGHRPPLLAITMRDARI 1613


>SB_51581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118 KDYKADNIYYVSCRKVDLLTP---RGHRPANKIVHMHKLRI 231
           KD    N+ Y +  +VDLLTP    GHRP    + M   RI
Sbjct: 142 KDRVGRNLDYRAFVRVDLLTPFAWHGHRPPLLAMTMRDARI 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,227
Number of Sequences: 59808
Number of extensions: 215161
Number of successful extensions: 520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)