Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    35   0.036
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    35   0.036
Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box transcr...    28   4.1  
Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical p...    27   9.4  
AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine re...    27   9.4  

>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +1

Query: 412 MADPKIEEILAPLRANVKEQGDL 480
           MA P+IE  LAPLRA VKE GDL
Sbjct: 1   MATPEIEAKLAPLRAAVKEYGDL 23


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +1

Query: 412 MADPKIEEILAPLRANVKEQGDL 480
           MA P+IE  LAPLRA VKE GDL
Sbjct: 65  MATPEIEAKLAPLRAAVKEYGDL 87


>Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical
           protein T07C4.6 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 468 FFHISSQRSEDFFNLRIGHNDFSKRIRYFNLSMK 367
           F  +++ +++   +L+I HN F+K  R  NLS K
Sbjct: 167 FIAVTAYQNQKITDLKIKHNSFAKGFRDGNLSRK 200


>AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box
           transcription factor TBX-9 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 468 FFHISSQRSEDFFNLRIGHNDFSKRIRYFNLSMK 367
           F  +++ +++   +L+I HN F+K  R  NLS K
Sbjct: 167 FIAVTAYQNQKITDLKIKHNSFAKGFRDGNLSRK 200


>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 292 HYTYKLVTERVSLTEIYYPNR 230
           HYTYK+V+ RV  T  +Y NR
Sbjct: 145 HYTYKMVSARVQAT--FYHNR 163


>Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.12 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 115 YKDYKADNIY-YVSCRKVDLLTPRGHRPANKIVHMHKLRIDSDNRSQLMRHVLSLVYKCS 291
           YK +     Y Y   RK++LL    + P      M K+ I +DNR+ +M      V    
Sbjct: 76  YKHFTEPGGYLYFPSRKIELLQNDDYNPYIFPSPMVKINIGTDNRNDVMNQFGFKV---- 131

Query: 292 VFSKQVTVFSNHLRL 336
           V+SK  T+  N + +
Sbjct: 132 VYSKYPTLEKNIINI 146


>AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein240 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 296 LVNKSQSSVIIYVFHTVSSGAAISFIERLKYRILFEKSLW 415
           L+N    S+ + V  T  SG ++  I   +Y ILF K  W
Sbjct: 88  LINNPGLSIYLLVTVTAFSGVSVLSIYENRYFILFCKKSW 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,946
Number of Sequences: 27780
Number of extensions: 166380
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)