Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 295 IHYT-YKLVTERVSLTEIYYPNRFEVYAY 212
           +H T YKLV + V+ +EI+Y    + Y +
Sbjct: 185 LHLTEYKLVEKWVNSSEIFYTTSQQYYGH 213


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 268 ERVSLTEIYYPNRFEVYAYGLF 203
           ER + TE Y PN  ++   GLF
Sbjct: 23  ERDTRTEYYLPNWTDLVLAGLF 44


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 139 IYYVSCRKVDLLTPRGHRPANKIVHMHK 222
           +YY    K  L+ P+G   +N I  + K
Sbjct: 75  MYYAGAVKAGLVQPQGTTFSNSISQLRK 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,864
Number of Sequences: 438
Number of extensions: 1989
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)