Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0459
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    30   0.71 
At4g15096.1 68417.m02320 hypothetical protein                          29   1.6  
At2g40955.1 68415.m05057 hypothetical protein                          29   1.6  
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica...    28   3.8  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    27   6.6  

>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 133 DNIYYVSCRKVDLLTPRGHRPANKIVHMHKLRIDSDNRSQLMRHVLSLVYKCSV 294
           D +Y +  R V+             V M  L +DS+ R  L R +L +V+KCS+
Sbjct: 188 DEVYKILLRPVEYEVEVWILALKSAVKMGILLMDSEMRFDLTRDILHIVWKCSL 241


>At4g15096.1 68417.m02320 hypothetical protein
          Length = 679

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 292 HYTYKLVTERVSLTEIYYPNRFEVYAYGLFYSQADDRVELGGPLYDRI 149
           HY Y + T+    T+++Y  R  VY  G   S+A + VE+   +Y  +
Sbjct: 598 HYEYSIWTQSDKGTQLFYSRRLVVYKLG---SEAKNVVEVSQRVYQLV 642


>At2g40955.1 68415.m05057 hypothetical protein
          Length = 679

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 292 HYTYKLVTERVSLTEIYYPNRFEVYAYGLFYSQADDRVELGGPLYDRI 149
           HY Y + T+    T+++Y  R  VY  G   S+A + VE+   +Y  +
Sbjct: 598 HYEYSIWTQSDKGTQLFYSRRLVVYKLG---SEAKNVVEVSQRVYQLV 642


>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q9U7E0
           Transcriptional regulator ATRX homolog {Caenorhabditis
           elegans}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 588

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 205 IVHMHKLRIDSDNRSQLMRHVLSLVYKCSVFSKQVTVFSNHL 330
           +  + K+R+D  N+S   R ++  V  C V  ++V VFS ++
Sbjct: 363 LAQLKKVRLDP-NQSVKTRFLMEFVELCEVIKEKVLVFSQYI 403


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1103

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 301 KQVTVFSNHLRLSHSQQWGSNKLHRKIKIPNPFREIIMADPKIEEI 438
           ++V  F N  RL      G   L R  +I    +E+ +AD  IE++
Sbjct: 862 EEVPCFENFSRLMELSMRGCKSLRRFPQISTSIQELNLADTAIEQV 907


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,380,338
Number of Sequences: 28952
Number of extensions: 149501
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)