Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   2.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.5  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 89  YCNDYDRDMRKCLKAERLQR 148
           Y N Y+ ++   LK+ERL +
Sbjct: 20  YTNQYNDELDAALKSERLMK 39


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 180 RCLDSSRLAFCL*SLSAFKHFL 115
           RC++S+ ++F L +   F +FL
Sbjct: 78  RCIESNMISFYLEATDDFAYFL 99


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 119 SSCRDHNHCNNL 84
           S C +H HC NL
Sbjct: 36  SICGEHGHCVNL 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,617
Number of Sequences: 336
Number of extensions: 1955
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)