Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    39   5e-04
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   2.6  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   4.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   7.9  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 20  ECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQR 181
           +C   I+ L +CH +  F KF G CN    +++ CL  +R  + + N + +R R
Sbjct: 12  QCADLIRALEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNRENARMR 63


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 35  IKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQK 154
           ++  +D  ++HP+ K  GY +   RD R   KAE   R++
Sbjct: 266 LRPSIDQIISHPYFKENGYHSSSIRDPRPSSKAEEKVRKR 305


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 291 LDSIPDLDNLK-TFTERYFSKRYLINVDGIKNNDMMIMFHSNRIALLSLAPSHSFFSKD- 464
           L S P +D  K +  +RY     L  +D ++   +++ +    IA+  + P H +  +D 
Sbjct: 62  LVSHPSIDKGKLSILKRYKMSHRLTAIDKLRPLTVLVAWKQLNIAMRPIFPQHRYTEQDK 121

Query: 465 ENYK 476
           +N+K
Sbjct: 122 KNWK 125


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 101 YDRDMRKCLKAERLQRQKANL 163
           YDR +R C+KA   Q+Q+ ++
Sbjct: 718 YDRLIRNCIKAHNKQQQRRSI 738


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 424 NAIRFE*NIIIISLFFMPSTLIKYRFEKYLSVKVFRLSKSGIESRMLKSIVFIITKL 254
           N  RF  ++ +  LFF  +  I YR  +Y  +    +  SG+ + +  S   ++T+L
Sbjct: 135 NHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTMLLTEL 191


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 294 DSIPDLDNLKTF 329
           D +PDLDNL TF
Sbjct: 871 DEVPDLDNLDTF 882


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 427  NNAIRFE*NIIIISLFFMPSTLIKYR--FEKYLSVKVFRLSKSGIESRMLKSIVFIITKL 254
            N A+RF+ ++I I   F+PS  ++    + K L  K ++  K G+  + L S+   I ++
Sbjct: 1077 NMALRFQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  CNDYDRDMRKCLKAERLQRQKANLDESRQRHANIR 196
           C+DY       +  +   + K + DE + +H N+R
Sbjct: 102 CDDYANSASTLVTNDDGTKTKVDSDEKKHKHKNVR 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,658
Number of Sequences: 5004
Number of extensions: 35046
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)