Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               31   0.50 
SB_51459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    27   6.1  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10)                27   6.1  
SB_48147| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          27   8.1  

>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 50  DCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQRHANIRARILAQSAAAN 229
           D HLN   R+ +  C D +R ++K  + +RL  Q+++ D SR+       R +  + AAN
Sbjct: 273 DRHLNEEVRQCLKRCPDIERTLQKEGELDRL-LQRSSRDRSRKISRRCSRRNIVCAMAAN 331


>SB_51459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 20  ECNIFIKKLVDCHLN-HPFRKFIGYCNDYDRDMRK 121
           +CN+  + + +C LN HP      YC+DY  DM++
Sbjct: 92  DCNVQYRSMDECRLNLHP------YCHDYQVDMKR 120


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 107 RDMRKCLKAERLQRQKANLDESRQRHA 187
           RD+RK L+AERL+R+K    E   RHA
Sbjct: 612 RDVRKRLRAERLRRKK----ELHSRHA 634


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 400 IIIISLFFMPSTLI-KYRFEKYLSVKVFRLSKSGIESRMLKSIVFIITKLV 251
           I +  L F+   +I KY   K+L  +VFRL     E ++   ++ +IT +V
Sbjct: 622 IFMFVLAFITGMVIGKYFVHKFLLCRVFRLKMFSEEGQIFMFVLAVITGMV 672


>SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10)
          Length = 397

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   IRHETDECNIFIKKLVDCHLNHPFRKFI 85
           IR +  +CNIF KKL +  LN P  K I
Sbjct: 43  IRIDAKDCNIFRKKLQNVLLNRPRLKNI 70


>SB_48147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -1

Query: 353 SF*KVSLCEGLQIV*VWY*I*NVEIHCFHNHKTCFLI*IYISWLLRSGLKFVLEYWRGVV 174
           +F K++  +G+ +V +   I    IHCFH++   FL+ + +          + E W  +V
Sbjct: 26  NFVKLNFPDGVIVVYLIDIIRKFRIHCFHSNILPFLLSVIVKIYTSIFFGSIFERWSNIV 85


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 236 IFKLENKFCDYENNGFQHSRFNTRLRQSEDLHRE 337
           +FKL+ +    +N G+  +    R+RQ EDL  E
Sbjct: 40  VFKLKQRRRTLKNRGYAQNSRTKRVRQREDLEYE 73


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 325 VFRLSKSGIESRMLKSIVFIITKLVF*FKYISVGCC 218
           V  LS        L+S+ + +T L F F YIS+ CC
Sbjct: 198 VILLSFEEYRKSALQSMKYKLTFLFFIFGYISLACC 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,668
Number of Sequences: 59808
Number of extensions: 221289
Number of successful extensions: 445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)