Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-10|AAM22045.1|  102|Caenorhabditis elegans Hypothetical p...    45   3e-05
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    27   7.1  
CU457737-2|CAM36323.1|  277|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U21324-10|AAM22045.1|  102|Caenorhabditis elegans Hypothetical
           protein C35D10.17 protein.
          Length = 102

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +2

Query: 14  TDECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKAN 160
           T ECN+ I+ L  CH   P  K IG C+ +D  + +C K ER+ R+  N
Sbjct: 11  TKECNMLIEFLQRCHSEKPIGKMIGKCSYWDEAVWQCTKKERIWRRDNN 59


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 KTSFVIMKTMDFNILDSIPDLDNLKTFTERYFSKRYL 359
           KT   I+  +D N++DS  D D +     +Y + +YL
Sbjct: 100 KTELTILDGLDANLVDSFADFDLMNAGDYKYKTLKYL 136


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 KTSFVIMKTMDFNILDSIPDLDNLKTFTERYFSKRYL 359
           KT   I+  +D N++DS  D D +     +Y + +YL
Sbjct: 103 KTELTILDGLDANLVDSFADFDLMNAGDYKYKTLKYL 139


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 110 DMRKCLKAERLQRQKANLDESRQRHANIRARILAQSA 220
           DMRKC  A+RL  +K      RQ   N++A I+A++A
Sbjct: 42  DMRKCFSAKRLYNEKV----KRQTDENLKA-IMAKTA 73


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
           protein F23D12.2 protein.
          Length = 1322

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 59  LNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQRHANIRA 199
           LN    + +G     ++ MRKC K    QR  A +++S Q  +N  A
Sbjct: 183 LNPAIARIMGKSRTPNKLMRKCKKDAENQRTLAKMEQSLQPPSNFLA 229


>CU457737-2|CAM36323.1|  277|Caenorhabditis elegans Hypothetical
           protein C52D10.3 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 77  KFIGYCNDYDRDMRKCLKAERLQRQKANLDE 169
           KF+GY  D  RDM+K L+  + QR+   L E
Sbjct: 190 KFLGYYGDAVRDMKKELR--KRQRESEQLSE 218


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 2   IRHETDECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQR 181
           I+ E + CN   ++    H +  +R  I    + D   RKC     + +  A L++   R
Sbjct: 283 IKCEENGCNFSTREARYIHFHKYYRHHIPLPENIDLGSRKCPFCRHVSKSPAMLEKHIAR 342

Query: 182 H 184
           H
Sbjct: 343 H 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,990
Number of Sequences: 27780
Number of extensions: 186060
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)