Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.18 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   5.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 47  VDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQR 148
           +D  L    RK I  C D  ++  KCL A++  R
Sbjct: 86  MDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSR 119


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 148  PLKSFSFQTFPH 113
            P K+  FQTFPH
Sbjct: 1739 PSKAMQFQTFPH 1750


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 DNLKTFTERYFSKRYLINVDGI 377
           +N   + ++ + K Y+IN++ I
Sbjct: 95  NNYNNYNKKLYYKNYIINIEQI 116


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 375 IKNNDMMIMFHS 410
           I+NND ++ FHS
Sbjct: 256 IRNNDRILYFHS 267


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 DNLKTFTERYFSKRYLINVDGI 377
           +N   + ++ + K Y+IN++ I
Sbjct: 336 NNYNNYNKKLYYKNYIINIEQI 357


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 122 CLKAERLQRQKANLDE 169
           CLK E  +R+K +LD+
Sbjct: 117 CLKFEEQKRRKKSLDD 132


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 315 NLKTFTERYFSKRYLINVDGI 377
           N   + ++ + K Y+IN++ I
Sbjct: 332 NYNNYNKKLYYKNYIINIEQI 352


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 197 ARILAQSAAAN*YIFKLENKFCDYENNGFQHSRFNTRLRQSEDL 328
           AR+++Q   +  Y+  +     D  NNG        +  ++EDL
Sbjct: 224 ARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,184
Number of Sequences: 438
Number of extensions: 2255
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)