Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0457
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18680.1 68417.m02763 hypothetical protein weak similarity to...    28   3.8  
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    27   5.0  
At1g74150.1 68414.m08588 kelch repeat-containing protein low sim...    27   6.6  
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot...    27   8.8  
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing...    27   8.8  

>At4g18680.1 68417.m02763 hypothetical protein weak similarity to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 235

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 233 YIFKLENKFCDYENNGFQHSRFNTRLRQSEDLHREILFK 349
           Y+ K+++ F D  + GF      T+L +  DLH E++ K
Sbjct: 97  YLLKIDDDF-DINHGGFMSDLTATQLGKLNDLHLEVIKK 134


>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 68  PFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQRHANI 193
           P  + +    DY+R  ++C   +RL  +K + D  R   +++
Sbjct: 186 PTGEIVSVTFDYERIRKRCFLCQRLTHEKGDCDSGRPGKSSV 227


>At1g74150.1 68414.m08588 kelch repeat-containing protein low
           similarity to rngB protein, Dictyostelium discoideum,
           PIR:S68824; contains Pfam profile PF01344: Kelch motif
          Length = 552

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 273 FS*SQNLFSNLNIYQLAAALWAKIRARI 190
           F+ SQNL+ +L +  L   +W+K+ A +
Sbjct: 250 FTDSQNLYDDLYVLDLETGVWSKVVAMV 277


>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 733

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 113 MRKCLKAERLQRQKANLDESRQRHANIRARILAQSAAAN*YIFKLENKFCDYENNG 280
           +RK L  ++  ++  N++++  R   +R   L ++ A     F+ EN+    +NNG
Sbjct: 188 LRKHLTIDKCLQKDINIEKNHWREVLLRIFSLVKNLAKQNLAFRGENEKIGQKNNG 243


>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
           [Homo sapiens] GI:899300; contains Pfam profiles
           PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 335

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  CNDYDRDMRKCLKAERLQRQKANLD 166
           C DY  + RK  +AERLQ+ K   D
Sbjct: 302 CRDYWEERRKTERAERLQQAKEYWD 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,114
Number of Sequences: 28952
Number of extensions: 165420
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)