Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0454
         (487 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1E613 Cluster: Putative uncharacterized protein; n=2; ...    33   2.6  
UniRef50_P39801 Cluster: Spore coat protein G; n=2; Bacillus|Rep...    32   7.9  

>UniRef50_Q1E613 Cluster: Putative uncharacterized protein; n=2;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 364

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 485 HKIYRHIMSNLNKNAGMFCRTRKSRYRCHKNKSLSHLFKKDSDISRPNC 339
           H+ +  ++    KNAG++C+  K ++  HK   L ++   +S + + +C
Sbjct: 29  HEKHVKLVLKALKNAGLYCKLAKCKFNAHKIDYLGYVITSESVLMKKSC 77


>UniRef50_P39801 Cluster: Spore coat protein G; n=2; Bacillus|Rep:
           Spore coat protein G - Bacillus subtilis
          Length = 195

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 431 CRTRKSRYRCHKNKSLSHLFKKDSDISRPNCHC*RYKRKNEYREPKKHYE 282
           CRT K  YR HK       +KK      P+ HC  YKR ++Y   K++++
Sbjct: 145 CRTHKKSYRSHKK-----YYKK------PHHHCDDYKRHDDYDSKKEYWK 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,685,861
Number of Sequences: 1657284
Number of extensions: 6369648
Number of successful extensions: 9658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9656
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)