Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0454
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   3.5  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.6  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   6.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   6.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.0  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   8.0  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   8.0  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 485 HKIYRHIMSNLNKNAGMFCRTRKSRYRCHKNKSLSHLFKKDS 360
           H  YR++MSN  K   M      SR R +  +SL  L + D+
Sbjct: 608 HNTYRNLMSNRTKLEEMKASLSSSRSRGNVLESLQRLHESDN 649


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 317 KNEYREPKKHYEVFLFDFISIKMICNLVL*FNFN 216
           +N    PK++YE+++F+  S++++   +L  + N
Sbjct: 2   RNSALTPKQYYELYMFNMESLRLLGGTLLETHLN 35


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 338 GNLGD*Y--RNLF*TGEINFCFYDIYIGFS 421
           G LGD Y  + +F  G I FC + +  GFS
Sbjct: 103 GRLGDIYGHKKMFVLGYIWFCIWSLISGFS 132


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 404 CH--KNKSLSHLFKKDSDISRPNCH 336
           CH   N  +  L K  SDIS PNC+
Sbjct: 232 CHYSTNSEMLDLSKTSSDISCPNCN 256


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 473 RHIMSNLNKNAGMFCRTRKSRYRCHKNKSLSHLFKKDSDISRP 345
           RH  SN++++       R S  R    +S S L  + SD+  P
Sbjct: 691 RHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSP 733


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 389 FCFYDIYIGFSLCDR--TCPHFYLSLT 463
           F   ++++GFSLC    + P F+L +T
Sbjct: 7   FSACEVFVGFSLCTLVISVPFFFLQMT 33


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 452 NKNAGMFCRTRKSRYRCHKNKSLSHLFK--KDSDISRPNCHC*RYKRKNEYRE 300
           +KN G F     +R  C +     +L +  KD+D    N  C   ++  +YR+
Sbjct: 109 DKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTDFFNANVDCFGREKHADYRD 161


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 479 IYRHIMSNLNKNAGMFC 429
           IYRHI+ NL +N    C
Sbjct: 158 IYRHIIDNLERNRSRQC 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,843
Number of Sequences: 5004
Number of extensions: 30413
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)