Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0454
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 404 IYIGFSLCDRTCPHFYLSLT*CVYKFY 484
           IY+  +LC + CP F L++T   +++Y
Sbjct: 87  IYVMCTLCIKRCPEFALTVTSLYFRYY 113


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 392  CFYDIYIGFSLCDRTCPHFYLSLT*CVY 475
            CF  +++   +C   CP  +  L  CVY
Sbjct: 1246 CFSCVHLSVRVCSPVCPRVFTCLFACVY 1273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,954
Number of Sequences: 59808
Number of extensions: 209827
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)