Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9NZQ8 Cluster: MTR1; n=31; Euteleostomi|Rep: MTR1 - Ho...    34   2.0  
UniRef50_UPI0000E4996E Cluster: PREDICTED: similar to transient ...    32   6.0  
UniRef50_UPI00006CCCEA Cluster: hypothetical protein TTHERM_0034...    32   6.0  
UniRef50_Q4J6L6 Cluster: Conserved membrane protein; n=1; Sulfol...    32   6.0  
UniRef50_P47046 Cluster: Uncharacterized protein IRC8; n=3; Sacc...    32   6.0  
UniRef50_Q86BB7 Cluster: CG32945-PA; n=2; Drosophila melanogaste...    32   7.9  
UniRef50_Q4YBT3 Cluster: Putative uncharacterized protein; n=2; ...    32   7.9  
UniRef50_Q4N8P3 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  
UniRef50_A4VE87 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  

>UniRef50_Q9NZQ8 Cluster: MTR1; n=31; Euteleostomi|Rep: MTR1 - Homo
            sapiens (Human)
          Length = 1165

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +2

Query: 269  SFPSIFA-WTQLKVLLRFNLTFIVSIR--LLSTFEYIF--ISVTRCYSWKFQNYSDYRRY 433
            S PS++A W  + +L+ F L   V +   L++ F Y F  +       WKFQ Y+    Y
Sbjct: 945  SCPSLYANWLVILLLVTFLLVTNVLLMNLLIAMFSYTFQVVQGNADMFWKFQRYNLIVEY 1004

Query: 434  HKIKILSPRF 463
            H+   L+P F
Sbjct: 1005 HERPALAPPF 1014


>UniRef50_UPI0000E4996E Cluster: PREDICTED: similar to transient
            receptor potential cation channel, subfamily M, member 3;
            n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
            similar to transient receptor potential cation channel,
            subfamily M, member 3 - Strongylocentrotus purpuratus
          Length = 1282

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 284  FAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYS--WKFQNYSDYRRYHKIKILSP 457
            F  T L V L  +   ++++ L++   Y F SV       WKFQ YS  + Y+   IL+P
Sbjct: 1019 FGTTILAVYLFISNVLLLNL-LIAMLNYTFASVQENTDVVWKFQRYSLIKDYYNRPILAP 1077

Query: 458  RF 463
             F
Sbjct: 1078 PF 1079


>UniRef50_UPI00006CCCEA Cluster: hypothetical protein TTHERM_00340180;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00340180 - Tetrahymena thermophila SB210
          Length = 2636

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 272  FPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSWKFQN-YSDYRRYHKIKI 448
            F  IF W  + +L  F   ++  ++L   + Y+FIS   CY  +F++   +Y +YHK+ +
Sbjct: 1761 FSGIF-WDYIILLCLFVQRYL--LQLEGRWTYVFISKDECYIPQFRDPQGEYSKYHKLPL 1817


>UniRef50_Q4J6L6 Cluster: Conserved membrane protein; n=1;
           Sulfolobus acidocaldarius|Rep: Conserved membrane
           protein - Sulfolobus acidocaldarius
          Length = 316

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +3

Query: 309 FYDLISRLLFPFDYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLKYSVRDFNRF 473
           ++ +ISRL FP   YL ++++   LL +    F+ + + V+II   +S+ D   +
Sbjct: 54  YFGMISRLFFPARNYLATHLTSLFLLAIPYYPFQALASLVLIITELWSISDIRGY 108


>UniRef50_P47046 Cluster: Uncharacterized protein IRC8; n=3;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           IRC8 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 822

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 325 EIKS*KYF*LSPRENRRKRNWINELTKSILLKSKNNRRCYYDSRLQN*GD 176
           ++K    F L P+ENR KRN   + TK    K  N+R   Y SRL    D
Sbjct: 253 KLKKYNSFFLGPKENRYKRN-TQQATKVPTEKKSNHRSSQYVSRLSTISD 301


>UniRef50_Q86BB7 Cluster: CG32945-PA; n=2; Drosophila
           melanogaster|Rep: CG32945-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 166

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   FGTSLKSVTITFSDPIKFEHTCQANERRVQDILV-CLQNCPTQKRQPS 143
           FG SLK V   F  P+K+   C+    + ++ LV C Q  P +  Q S
Sbjct: 94  FGKSLKLVQELFGTPVKWAKDCEGEIEKFEEELVHCYQRFPNEPLQCS 141


>UniRef50_Q4YBT3 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 869

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -1

Query: 384 VTEIK-IYSNVDNNRMETINVRLNRKSTFN*VHAKIEGNEIGLTS*LNRFY*NRRIIVDV 208
           +TEIK I  N+DNN     N+ +N K   N  + +++ +EI      N    N  I  D 
Sbjct: 164 ITEIKSINGNMDNNNPSFKNLNINNKPNLNNKNGEVKNDEIKNDEIKNDEIKNDEIKNDE 223

Query: 207 IMIPDCKIEEI 175
           I   + K +EI
Sbjct: 224 IKNDEIKNDEI 234


>UniRef50_Q4N8P3 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1466

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 210 HLRLFFDFNKIDLVNSLIQFRFLRFSRGLN*KYFYDLISRLLFPFDYYLHSNISLFQLLV 389
           + R   DF  ++ VNS I    L    GL+   +Y     L     Y   SN+++  LL 
Sbjct: 350 YFRFQMDFTSVETVNSSISSSLLSVKHGLDQNLYYIKAFHLPSLCPYTNLSNLNVSNLLH 409

Query: 390 VIRGNFKIILTTVV 431
           + R   +IIL  ++
Sbjct: 410 LFRVKRRIILNEMI 423


>UniRef50_A4VE87 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 177

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
 Frame = +3

Query: 306 YFYDLISRLLFPFDYY--LHSNISLFQLLVVIRGNFKIILTTVVIIKL-KYSVRDFNR 470
           +FYDL S+LL  F+YY  L S I + + L      + ++++ +++I+  +Y V++F++
Sbjct: 61  HFYDLFSQLLHRFNYYQLLESLILITKYLNFKFIKYFLLISQIILIESNQYQVKNFSQ 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,951,437
Number of Sequences: 1657284
Number of extensions: 8611932
Number of successful extensions: 22404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22300
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)