Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   2.7  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   4.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.1  

>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 18  KSVTITFSDPIKFEHTCQANERRVQDILVCLQNCPTQKRQPSKFHIKMTRQNESPQFC 191
           +S  +T  DP     T    +  + D+L    + P QK   S  H     Q++SPQ C
Sbjct: 182 RSKAVTIEDP-SIVRT-NIYDPSLDDVLKGKGSTPNQKPSLSNLHENNIDQSDSPQHC 237


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 126 QKRQPSKFHIKMTRQNESPQFCNRES**HLR 218
           ++R+P+  HI+ + +N  P++  + S  HLR
Sbjct: 630 RQREPTLGHIESSIENHRPRYSRQNSESHLR 660


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 213 LRLFFDFNKIDLVNSLIQFRFLRFSRGLN*KYFYDLISRLLFPFDYYLHSNISLFQLLV 389
           + LF D   I L +SL +F  L +       + +DL +  +  + YY+ +N+S   L +
Sbjct: 120 ISLFADIRFIKLFDSLKEFHKLIYQLISEKSFLWDLYASFMRYWKYYI-TNVSSIVLQI 177


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 334 CFHSIIIYIRIYLYFSYSLLFVEISKLF 417
           C   II+ + +Y  F+Y L+F+ +  LF
Sbjct: 310 CTEPIIMALGLYNGFAYGLIFLYLDGLF 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,267
Number of Sequences: 5004
Number of extensions: 39858
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)